Effective results for Ruminococcus torques L2-14 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 61 proteins (4 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
657313.RTO_06050				(PF01496)	(mitochondrial)
657313.RTO_22970				(PF00137)	ER
657313.RTO_06040				(PF00137)	ER
657313.RTO_05730				(PF06541)	ER
657313.RTO_26640				(PF01554)	(ER)
657313.RTO_26630				(PF01554)	(ER)
657313.RTO_06520				(PF06541)	mitochondrial
657313.RTO_11110				(PF01416)	(mitochondrial)
657313.RTO_06240				(PF00137)	ER
657313.RTO_15880				(PF01554)	(ER)
657313.RTO_11170				(PF06541)	ER
657313.RTO_14920				(PF01554)	(mitochondrial)
657313.RTO_13840				(PF16875) (PF16874)
657313.RTO_25230				(PF16875) (PF16874)
657313.RTO_04110				(PF01554)	(ER)
657313.RTO_15410				(PF01554)	(ER)
657313.RTO_02770				(PF16875) (PF16874)
657313.RTO_13450				(PF01554)	(ER)
657313.RTO_15850				(PF14691)
657313.RTO_25480				(PF01554)
657313.RTO_22960				(PF01496)
657313.RTO_00270				(PF01554)
657313.RTO_15060				(PF01554)
657313.RTO_15330				(PF14691)
657313.RTO_21770				(PF14691)
657313.RTO_03090				(PF14691)
657313.RTO_30710				(PF03432)
657313.RTO_10780				(PF01554)
657313.RTO_29420				(PF01416)
657313.RTO_24480				(PF01416)
657313.RTO_20960				(PF03432)
657313.RTO_11240				(PF03432)
657313.RTO_16940				(PF01795)
657313.RTO_00230				(PF01554)
657313.RTO_22980				(PF01990)
657313.RTO_24270				(PF14691)
657313.RTO_07090				(PF01554)
657313.RTO_00130				(PF01554)
657313.RTO_18850				(PF13155)
657313.RTO_30570				PF14311
657313.RTO_24450				(PF01554)
657313.RTO_29880				(PF01795)
657313.RTO_22660				PF07959
657313.RTO_06030				(PF01991)
657313.RTO_29670				(PF01554)
657313.RTO_12630				(PF03432)
657313.RTO_28080				(PF03432)
657313.RTO_06010				(PF01990)
657313.RTO_05210				(PF13155)
657313.RTO_11700				(PF03432)
657313.RTO_04500				(PF13151)
657313.RTO_03980				(PF02475)
657313.RTO_24350				(PF01554)
657313.RTO_15870				PF14311
657313.RTO_04180				PF11443
657313.RTO_06290				(PF14691)
657313.RTO_01910				(PF13155)
657313.RTO_30670				(PF13155)
657313.RTO_14930				(PF01554)
657313.RTO_14020				(PF01554)
657313.RTO_12460				(PF01554)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================