Metamenu

Effective results for Leptotrichia hofstadii F0254 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 66 proteins (7 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
634994.GCWU000323_01283(PF02661)(ER)
634994.GCWU000323_00418(PF09511)mitochondrial
634994.GCWU000323_02018(PF04263)(mitochondrial)
634994.GCWU000323_02355PF12327(mitochondrial)
634994.GCWU000323_00836(PF13539)(mitochondrial)
634994.GCWU000323_02087(PF13932)(mitochondrial)
634994.GCWU000323_02761(PF03797)ER
634994.GCWU000323_00947(PF00453)(mitochondrial)
634994.GCWU000323_01312(PF03797)ER
634994.GCWU000323_02138(PF05704)(mitochondrial)
634994.GCWU000323_01587(PF03083)ER
634994.GCWU000323_00968(PF03797)mitochondrial
634994.GCWU000323_01345(PF09820) (PF08011)
634994.GCWU000323_02539(PF09820) (PF08011)
634994.GCWU000323_02353(PF00091) PF12327
634994.GCWU000323_01090(PF09820) (PF08011)
634994.GCWU000323_00854(PF00091) PF12327
634994.GCWU000323_01260(PF09820) (PF08011)
634994.GCWU000323_02080(PF09820) (PF08011)
634994.GCWU000323_01850(PF09820) (PF08011)
634994.GCWU000323_00036(PF02661)(mitochondrial)
634994.GCWU000323_02841(PF00091) PF12327
634994.GCWU000323_01962(PF09820) (PF08011)
634994.GCWU000323_00437(PF03797)
634994.GCWU000323_01128(PF02661)
634994.GCWU000323_00233(PF13539)
634994.GCWU000323_02812(PF03143)not used
634994.GCWU000323_02813(PF03143)not used
634994.GCWU000323_00397PF01795not used
634994.GCWU000323_00396PF01795
634994.GCWU000323_00398PF01795
634994.GCWU000323_02828(PF02661)
634994.GCWU000323_00895(PF03054)
634994.GCWU000323_02017(PF04263)
634994.GCWU000323_02738(PF13597)
634994.GCWU000323_02737(PF13597)
634994.GCWU000323_02736(PF13597)
634994.GCWU000323_01091(PF09820)
634994.GCWU000323_01070(PF03797)
634994.GCWU000323_00295(PF02661)
634994.GCWU000323_00896(PF03054)
634994.GCWU000323_02612(PF02661)
634994.GCWU000323_02297(PF00162)
634994.GCWU000323_02298(PF00162)
634994.GCWU000323_02754(PF03797)
634994.GCWU000323_00589(PF13539)
634994.GCWU000323_01190(PF02661)
634994.GCWU000323_01141(PF03054)
634994.GCWU000323_02541(PF02661)
634994.GCWU000323_00008(PF03797)
634994.GCWU000323_00005(PF03797)
634994.GCWU000323_01942(PF13932)
634994.GCWU000323_01941(PF13932)
634994.GCWU000323_00946(PF00453)not used
634994.GCWU000323_02454(PF03143)
634994.GCWU000323_01006(PF05697)not used
634994.GCWU000323_01005(PF05697)
634994.GCWU000323_00687(PF02661)
634994.GCWU000323_02048(PF04263)
634994.GCWU000323_00403(PF01991)
634994.GCWU000323_01565(PF03083)
634994.GCWU000323_00982(PF11899)
634994.GCWU000323_00983(PF11899)
634994.GCWU000323_02903(PF03797)
634994.GCWU000323_02901(PF03143)
634994.GCWU000323_01572(PF03797)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================