Effective results for Caldicellulosiruptor kristjanssonii I77R1B (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 37 proteins (14 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
632335.Calkr_2532				(PF01930)	(ER)
632335.Calkr_1993				(PF00686)	ER
632335.Calkr_0770				(PF01807)	(mitochondrial); mitochondrial
632335.Calkr_1541				(PF03796) (PF01807)
632335.Calkr_1827				PF13936	(mitochondrial)
632335.Calkr_0763				(PF16661)	(plastid)
632335.Calkr_0223				(PF13394)	(mitochondrial)
632335.Calkr_2140				(PF03796)	ER
632335.Calkr_0439				PF13936
632335.Calkr_1882				(PF13394)
632335.Calkr_1989				(PF00686)
632335.Calkr_1995				PF08784
632335.Calkr_2520				(PF13394)
632335.Calkr_2523				PF07522
632335.Calkr_2418				(PF01930)
632335.Calkr_0270				(PF13394)
632335.Calkr_2084				(PF03796)
632335.Calkr_2060				(PF01807)
632335.Calkr_1260				(PF16661)
632335.Calkr_0394				(PF13394)
632335.Calkr_0026				PF13936
632335.Calkr_0732				PF13936
632335.Calkr_2271				PF13936
632335.Calkr_1678				PF13936
632335.Calkr_0650				(PF03796)
632335.Calkr_0810				(PF09419)
632335.Calkr_2058				PF13936
632335.Calkr_0170				(PF13394)
632335.Calkr_1032				(PF13394)
632335.Calkr_0081				(PF01807)
632335.Calkr_0152				PF13936
632335.Calkr_2347				PF13936
632335.Calkr_2010				PF13936
632335.Calkr_1308				PF13936
632335.Calkr_1301				PF13936
632335.Calkr_2576				(PF01930)
632335.Calkr_1792				(PF13394)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================