Effective results for Kingella oralis ATCC 51147 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (13 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
629741.GCWU000324_02761PF03083(ER)
629741.GCWU000324_03187(PF04127)(mitochondrial)
629741.GCWU000324_01588PF12762(ER)
629741.GCWU000324_01320(PF04127)(ER)
629741.GCWU000324_01264PF12762(ER)
629741.GCWU000324_00516PF12762(ER)
629741.GCWU000324_01020(PF12949)(ER)
629741.GCWU000324_01990(PF04383)mitochondrial; (mitochondrial)
629741.GCWU000324_02065PF03083(mitochondrial)
629741.GCWU000324_00975(PF04383)
629741.GCWU000324_01423PF12762
629741.GCWU000324_02763PF03083not used
629741.GCWU000324_01940(PF05167)
629741.GCWU000324_01304PF12762
629741.GCWU000324_01105(PF05167)
629741.GCWU000324_00605PF12762
629741.GCWU000324_02937PF12762not used
629741.GCWU000324_01708(PF11969)
629741.GCWU000324_00816PF12762
629741.GCWU000324_02401(PF16804)
629741.GCWU000324_03047(PF09511)
629741.GCWU000324_00820PF12762
629741.GCWU000324_00132PF03083

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================