Effective results for Cellulomonas fimi ATCC 484 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 56 proteins (2 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
590998.Celf_1925				(PF00553) (PF01341)	(mitochondrial); mitochondrial
590998.Celf_0088				(PF00331) (PF00553)	mitochondrial; ER
590998.Celf_3184				(PF00553) (PF01341)	ER
590998.Celf_0045				(PF00759) (PF00553)	(ER)
590998.Celf_0019				(PF00759) (PF00553)	mitochondrial; ER
590998.Celf_3156				(PF00331)	mitochondrial; (mitochondrial)
590998.Celf_0574				(PF00331)	ER
590998.Celf_2856				(PF00553)	ER
590998.Celf_2940				(PF05154)	ER
590998.Celf_3161				(PF00553)	(ER)
590998.Celf_1924				(PF00553)	(ER)
590998.Celf_1329				(PF00553)	ER
590998.Celf_0403				(PF00553)	ER
590998.Celf_0404				(PF00553)	ER
590998.Celf_1913				(PF00553)	mitochondrial
590998.Celf_3400				(PF00553)	ER; (mitochondrial)
590998.Celf_1537				(PF00759)	ER
590998.Celf_0270				(PF00553)	ER
590998.Celf_1705				(PF00759)	(mitochondrial)
590998.Celf_0398				(PF03211)	ER
590998.Celf_1230				(PF01341)	ER
590998.Celf_1340				(PF03211)	(mitochondrial)
590998.Celf_1754				(PF00553)	ER
590998.Celf_0345				(PF00553)	mitochondrial
590998.Celf_0233				(PF01341)	mitochondrial
590998.Celf_3773				(PF03639)	(ER)
590998.Celf_1271				(PF00331) (PF00553)
590998.Celf_3337				PF02815
590998.Celf_3143				(PF00413)
590998.Celf_0217				(PF06271)
590998.Celf_1769				(PF00413)
590998.Celf_2335				(PF06271)
590998.Celf_3558				(PF12224)
590998.Celf_3313				(PF02449)
590998.Celf_2309				(PF12224)
590998.Celf_2785				(PF02449)
590998.Celf_2544				(PF00413)
590998.Celf_0948				(PF06271)
590998.Celf_0895				PF08213	not used
590998.Celf_0526				(PF02449)
590998.Celf_2226				(PF05154)
590998.Celf_2222				(PF06271)
590998.Celf_0957				(PF06271)
590998.Celf_0886				(PF02449)
590998.Celf_0885				(PF02449)
590998.Celf_1481				(PF00759)
590998.Celf_1650				(PF06271)
590998.Celf_2394				(PF06271)
590998.Celf_3264				(PF05154)
590998.Celf_2481				(PF06271)
590998.Celf_3271				(PF02449)
590998.Celf_3270				(PF01229)
590998.Celf_1729				(PF00331)
590998.Celf_3454				(PF03639)
590998.Celf_2981				(PF01229)
590998.Celf_1744				(PF01229)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================