Effective results for Bacteroides sp. D20 (eggnog40)

Summary

Number of putative secreted proteins: 186
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 62 eukaryotic-like domains, contained in 186 proteins (23 high, 163 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
585543.HMPREF0969_01952				(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)	ER
585543.HMPREF0969_01949				(PF02929) (PF00703) (PF16353) (PF02836) (PF02837)	ER; (ER)
585543.HMPREF0969_02399				(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)	ER
585543.HMPREF0969_03518				(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)	ER
585543.HMPREF0969_02028				(PF02929) (PF00703) (PF16353) (PF02837) (PF02836)	ER
585543.HMPREF0969_02164				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_01495				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_01493				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_01348				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_02271				(PF16334) (PF16335) (PF17168) (PF08760)	ER
585543.HMPREF0969_01068				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_02030				(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)	(ER)
585543.HMPREF0969_00085				(PF00703) (PF16355) (PF02836) (PF02837)	ER
585543.HMPREF0969_02693				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01499				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_00830				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02309				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01542				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_02311				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_02312				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_01577				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_01564				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02051				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01487				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_00346				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01347				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_00912				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02840				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02841				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01391				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_01390				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02012				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02015				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_02037				(PF00703) (PF02836) (PF02837)	ER
585543.HMPREF0969_01910				(PF00933) (PF01915) (PF14310)	ER
585543.HMPREF0969_03170				(PF13802) (PF16338)	ER
585543.HMPREF0969_02572				(PF07971) (PF14683)	ER
585543.HMPREF0969_02361				(PF13290) (PF07971)	(ER)
585543.HMPREF0969_00835				PF12215 PF04685	ER
585543.HMPREF0969_02303				(PF14684) (PF03572)	mitochondrial
585543.HMPREF0969_00828				PF12215 PF04685	ER
585543.HMPREF0969_01578				(PF02929) (PF02836) (PF16353)	(mitochondrial)
585543.HMPREF0969_01349				(PF13802) (PF16338)	ER
585543.HMPREF0969_01703				(PF13802) (PF16338)	ER
585543.HMPREF0969_01045				(PF14684) (PF03572)	ER
585543.HMPREF0969_02021				(PF14684) (PF03572)	ER
585543.HMPREF0969_01584				(PF03572)	ER
585543.HMPREF0969_00860				PF07168	ER
585543.HMPREF0969_02573				(PF07971)	ER
585543.HMPREF0969_02578				(PF07971)	ER
585543.HMPREF0969_02365				PF06824	(ER); (mitochondrial)
585543.HMPREF0969_02543				(PF00759)	ER
585543.HMPREF0969_00035				(PF03051)	ER
585543.HMPREF0969_02145				PF14771	ER
585543.HMPREF0969_00027				(PF00759)	ER
585543.HMPREF0969_02156				(PF00933)	ER
585543.HMPREF0969_02157				(PF00933)	ER
585543.HMPREF0969_03330				PF14771	ER
585543.HMPREF0969_03463				PF13854	ER
585543.HMPREF0969_00787				(PF03572)	ER
585543.HMPREF0969_02941				(PF02719)	ER; (ER)
585543.HMPREF0969_00829				(PF13290)	ER
585543.HMPREF0969_01997				(PF00759)	ER
585543.HMPREF0969_01571				PF06824	ER
585543.HMPREF0969_01373				(PF13905)	ER
585543.HMPREF0969_03121				(PF12437)	mitochondrial; (mitochondrial)
585543.HMPREF0969_00769				(PF07971)	ER
585543.HMPREF0969_00765				(PF07971)	ER
585543.HMPREF0969_02618				(PF00933) (PF01915) (PF14310)
585543.HMPREF0969_01566				(PF07971)	ER
585543.HMPREF0969_01567				(PF03663)	ER
585543.HMPREF0969_01563				(PF13802)	ER
585543.HMPREF0969_01698				(PF00759)	ER
585543.HMPREF0969_01699				(PF07221)	ER
585543.HMPREF0969_00806				(PF03572)	ER
585543.HMPREF0969_00775				(PF07971)	ER
585543.HMPREF0969_01739				(PF03572)	ER
585543.HMPREF0969_01593				PF11175	ER
585543.HMPREF0969_02046				PF07168	ER
585543.HMPREF0969_01597				PF06824	mitochondrial
585543.HMPREF0969_02295				(PF13905)	ER
585543.HMPREF0969_01502				(PF16401)	(ER)
585543.HMPREF0969_02282				(PF03051)	ER
585543.HMPREF0969_02660				(PF00759)	(mitochondrial)
585543.HMPREF0969_00620				(PF00216)	(mitochondrial); mitochondrial
585543.HMPREF0969_01395				(PF00933) (PF01915) (PF14310)
585543.HMPREF0969_02274				PF06824	ER
585543.HMPREF0969_02272				(PF07971)	ER
585543.HMPREF0969_01840				(PF13905)	ER
585543.HMPREF0969_01701				(PF00759)	(ER)
585543.HMPREF0969_01707				(PF00759)	ER; (ER)
585543.HMPREF0969_02266				(PF03663)	ER
585543.HMPREF0969_02480				(PF02544)	ER
585543.HMPREF0969_01064				(PF03572)	ER
585543.HMPREF0969_00645				(PF03051)	ER
585543.HMPREF0969_01468				PF16011	ER
585543.HMPREF0969_00897				(PF13905)	ER
585543.HMPREF0969_02000				PF16011	ER
585543.HMPREF0969_01078				(PF15891)	ER
585543.HMPREF0969_00083				(PF07745)	ER
585543.HMPREF0969_00084				(PF07745)	ER
585543.HMPREF0969_02026				(PF16338)	ER
585543.HMPREF0969_01906				(PF03572)	ER
585543.HMPREF0969_02699				(PF01807) (PF13155)
585543.HMPREF0969_00319				(PF01807) (PF13155)
585543.HMPREF0969_01795				(PF01807) (PF13155)
585543.HMPREF0969_01364				(PF01807) (PF13155)
585543.HMPREF0969_02332				(PF01807) (PF13155)
585543.HMPREF0969_01232				(PF07837) (PF02971)
585543.HMPREF0969_00919				(PF05970) PF02689
585543.HMPREF0969_00893				(PF01715)	(plastid)
585543.HMPREF0969_01599				PF12215 PF04685
585543.HMPREF0969_03403				(PF05970) PF02689
585543.HMPREF0969_00502				(PF02719)
585543.HMPREF0969_03561				(PF02357)
585543.HMPREF0969_00189				(PF03572)
585543.HMPREF0969_01454				(PF03054)
585543.HMPREF0969_01639				(PF13415)
585543.HMPREF0969_02835				(PF00703)
585543.HMPREF0969_00866				(PF07221)
585543.HMPREF0969_00191				(PF03054)
585543.HMPREF0969_03552				(PF03031)
585543.HMPREF0969_03559				(PF02719)
585543.HMPREF0969_01330				(PF00216)
585543.HMPREF0969_00506				(PF02357)
585543.HMPREF0969_01153				(PF13481)
585543.HMPREF0969_02178				(PF00216)
585543.HMPREF0969_00320				(PF13481)
585543.HMPREF0969_00210				(PF13481)
585543.HMPREF0969_03092				(PF00216)
585543.HMPREF0969_03095				(PF13155)
585543.HMPREF0969_01323				(PF01637)
585543.HMPREF0969_03432				(PF02719)
585543.HMPREF0969_00092				(PF07745)
585543.HMPREF0969_03444				(PF02357)
585543.HMPREF0969_00831				PF11175
585543.HMPREF0969_03201				(PF00216)
585543.HMPREF0969_03202				(PF00216)
585543.HMPREF0969_03146				(PF00216)
585543.HMPREF0969_02639				(PF00703)
585543.HMPREF0969_01303				(PF01637)
585543.HMPREF0969_03450				(PF00216)
585543.HMPREF0969_02947				(PF02357)
585543.HMPREF0969_03131				(PF02357)
585543.HMPREF0969_03137				(PF02719)
585543.HMPREF0969_01998				(PF16401)
585543.HMPREF0969_00799				(PF00958)
585543.HMPREF0969_01572				(PF03663)
585543.HMPREF0969_01980				PF06824
585543.HMPREF0969_03053				(PF00216)
585543.HMPREF0969_02615				(PF07971)
585543.HMPREF0969_01696				(PF01637)
585543.HMPREF0969_00800				(PF00958)
585543.HMPREF0969_02189				(PF07221)
585543.HMPREF0969_03064				(PF05693)
585543.HMPREF0969_00778				(PF07971)
585543.HMPREF0969_01421				(PF01823)
585543.HMPREF0969_00599				(PF02357)
585543.HMPREF0969_02994				PF07959
585543.HMPREF0969_01439				(PF04991)
585543.HMPREF0969_02700				(PF13481)
585543.HMPREF0969_03651				(PF00216)
585543.HMPREF0969_03253				(PF02026)
585543.HMPREF0969_02283				(PF03054)
585543.HMPREF0969_00283				(PF13155)
585543.HMPREF0969_00756				(PF01715)
585543.HMPREF0969_02848				(PF13155)
585543.HMPREF0969_02849				(PF13481)
585543.HMPREF0969_01669				(PF00216)
585543.HMPREF0969_02069				(PF00216)
585543.HMPREF0969_02062				PF16269
585543.HMPREF0969_03015				(PF00216)
585543.HMPREF0969_01875				(PF00216)
585543.HMPREF0969_00382				(PF00216)
585543.HMPREF0969_01706				(PF07221)
585543.HMPREF0969_03526				(PF04991)
585543.HMPREF0969_02642				(PF00216)
585543.HMPREF0969_02647				(PF12437)
585543.HMPREF0969_02649				(PF03630)
585543.HMPREF0969_01605				PF11175
585543.HMPREF0969_01285				(PF02357)
585543.HMPREF0969_01827				(PF04991)
585543.HMPREF0969_00063				(PF13290)
585543.HMPREF0969_01041				(PF00216)
585543.HMPREF0969_01590				PF11175
585543.HMPREF0969_01089				(PF16314)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================