Effective results for Roseburia hominis A2-183 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 108 proteins (11 high, 97 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585394.RHOM_00730(PF13524)(ER)
585394.RHOM_08050(PF01554)ER; (ER)
585394.RHOM_11130(PF01554)ER
585394.RHOM_00920(PF13524)ER
585394.RHOM_07530(PF01554)(ER)
585394.RHOM_08080(PF12051)(mitochondrial)
585394.RHOM_11300(PF00239)mitochondrial; (mitochondrial)
585394.RHOM_06110(PF01554)ER
585394.RHOM_08745(PF16116)(mitochondrial)
585394.RHOM_00690(PF13524)(mitochondrial)
585394.RHOM_06170PF07745(ER)
585394.RHOM_12880(PF01554)ER
585394.RHOM_13600(PF03432)(mitochondrial); mitochondrial
585394.RHOM_09300(PF01554)ER
585394.RHOM_10035(PF06541)(ER)
585394.RHOM_00060(PF06541)ER
585394.RHOM_10735PF07745ER
585394.RHOM_00260(PF01554)ER; (ER)
585394.RHOM_14290(PF01554)ER
585394.RHOM_08720(PF16116)(plastid)
585394.RHOM_09230(PF00882)(mitochondrial)
585394.RHOM_00925(PF13524)(mitochondrial)
585394.RHOM_08090(PF12051)(mitochondrial)
585394.RHOM_04930(PF13155) PF01807
585394.RHOM_05805(PF06165) (PF17167)
585394.RHOM_10370(PF00239)(mitochondrial)
585394.RHOM_05810(PF06165) (PF17167)
585394.RHOM_09920(PF13524)(mitochondrial)
585394.RHOM_03320(PF06165) (PF17167)
585394.RHOM_02790(PF01554)(ER)
585394.RHOM_07475(PF06165) (PF17167)
585394.RHOM_11550(PF06165) (PF17167)
585394.RHOM_10655(PF01554)(mitochondrial)
585394.RHOM_00720(PF01501)(ER)
585394.RHOM_00725(PF01501)(ER)
585394.RHOM_10290(PF03432)
585394.RHOM_14195(PF00882)
585394.RHOM_00735(PF13524)
585394.RHOM_01555PF01807
585394.RHOM_01550(PF00239)
585394.RHOM_08605(PF13524)
585394.RHOM_01720(PF00239)
585394.RHOM_16120(PF00239)
585394.RHOM_16125(PF00239)
585394.RHOM_13035(PF06541)
585394.RHOM_10770(PF00239)
585394.RHOM_10395(PF03432)
585394.RHOM_12920(PF01554)
585394.RHOM_15590(PF00239)
585394.RHOM_08950(PF12646)
585394.RHOM_11690(PF13524)
585394.RHOM_11675(PF05023)
585394.RHOM_06495PF01807
585394.RHOM_13305(PF00239)
585394.RHOM_01960(PF03432)
585394.RHOM_01145(PF01554)
585394.RHOM_01850(PF00239)
585394.RHOM_10245(PF00239)
585394.RHOM_16555(PF13155)
585394.RHOM_16770(PF01554)
585394.RHOM_11090(PF00239)
585394.RHOM_00770(PF13524)
585394.RHOM_15410(PF00239)
585394.RHOM_16540(PF03432)
585394.RHOM_16785(PF01554)
585394.RHOM_01900PF01807
585394.RHOM_12200(PF01501)
585394.RHOM_01835PF01807
585394.RHOM_14920(PF01795)
585394.RHOM_00575(PF01554)
585394.RHOM_10350(PF05063)
585394.RHOM_01295(PF07892)
585394.RHOM_12855(PF01554)
585394.RHOM_01620(PF00239)
585394.RHOM_12215(PF01501)
585394.RHOM_09835(PF14622)
585394.RHOM_13665(PF05063)
585394.RHOM_10755PF07745
585394.RHOM_06355(PF01554)
585394.RHOM_15425PF01807
585394.RHOM_10815(PF00239)
585394.RHOM_00685(PF13524)
585394.RHOM_00680(PF13524)
585394.RHOM_13280(PF12640)
585394.RHOM_15290(PF03432)
585394.RHOM_03790(PF13151)
585394.RHOM_01650(PF13155)
585394.RHOM_16340(PF00239)
585394.RHOM_00220(PF01554)
585394.RHOM_16305(PF13155)
585394.RHOM_10945PF07745
585394.RHOM_16535(PF04253)
585394.RHOM_10540(PF00239)
585394.RHOM_13545(PF00239)
585394.RHOM_06310(PF01554)
585394.RHOM_01695(PF03432)
585394.RHOM_14385(PF01554)
585394.RHOM_06535(PF01554)
585394.RHOM_13945(PF01554)
585394.RHOM_15125(PF14622)
585394.RHOM_10145(PF01554)
585394.RHOM_02415(PF07892)
585394.RHOM_03695(PF01554)
585394.RHOM_16115(PF00239)
585394.RHOM_09215(PF01795)
585394.RHOM_06510(PF00239)
585394.RHOM_10730PF07745
585394.RHOM_15925(PF01554)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================