Effective results for Desulfobulbus propionicus DSM 2032 (eggnog40)

Summary

Number of putative secreted proteins: 105
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 105 proteins (2 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
577650.Despr_1396				(PF00037) (PF12838)	(mitochondrial); mitochondrial
577650.Despr_2873				(PF01326)	mitochondrial
577650.Despr_1366				(PF00989)	ER
577650.Despr_2693				(PF04930)	ER
577650.Despr_1417				(PF00989)	ER
577650.Despr_1987				PF01591	ER
577650.Despr_2867				(PF01326)	(mitochondrial)
577650.Despr_2865				(PF01326)	(mitochondrial)
577650.Despr_3336				(PF00989)	ER
577650.Despr_0359				(PF09458)	ER
577650.Despr_0571				(PF00989)	mitochondrial; (mitochondrial)
577650.Despr_1760				(PF00989)	ER
577650.Despr_1763				(PF12838)	(mitochondrial)
577650.Despr_0964				(PF00989)	(ER)
577650.Despr_3000				(PF00989)	(ER); ER
577650.Despr_1142				(PF00989)	ER
577650.Despr_2306				(PF00989)	ER
577650.Despr_1211				(PF00989)	ER
577650.Despr_3207				(PF01058)	(mitochondrial)
577650.Despr_0621				(PF00989)	ER
577650.Despr_1593				(PF00112)	ER
577650.Despr_1694				(PF00989)	ER
577650.Despr_1693				(PF00989)	ER
577650.Despr_0989				(PF00989)	mitochondrial
577650.Despr_0602				(PF00989)	ER
577650.Despr_0282				(PF00989)	ER
577650.Despr_2928				(PF00902)	ER
577650.Despr_0388				(PF09458)	ER
577650.Despr_1381				(PF12838)	mitochondrial
577650.Despr_0128				(PF00989)	ER
577650.Despr_1529				(PF00989)	ER
577650.Despr_0004				(PF00037)	ER
577650.Despr_0028				(PF16561)	mitochondrial
577650.Despr_1353				(PF14691) (PF12838) (PF00037)
577650.Despr_2469				(PF00902)	(mitochondrial)
577650.Despr_3325				(PF01058)	(mitochondrial)
577650.Despr_2150				(PF02943)	(mitochondrial)
577650.Despr_0054				(PF14691) (PF12838)
577650.Despr_2111				(PF12838)	(mitochondrial)
577650.Despr_1713				(PF00989)	plastid
577650.Despr_0008				(PF00037) (PF12838)
577650.Despr_1601				(PF01257) (PF12838)
577650.Despr_1600				(PF01257) (PF00037)
577650.Despr_0581				(PF00989)
577650.Despr_0580				(PF00989)
577650.Despr_0584				(PF00112)
577650.Despr_1187				(PF00989)
577650.Despr_1743				(PF01058)
577650.Despr_1741				(PF12838)
577650.Despr_2696				(PF01326)
577650.Despr_0839				(PF03692)
577650.Despr_2055				(PF00037)
577650.Despr_2059				(PF01257)
577650.Despr_1985				(PF10571)
577650.Despr_1981				(PF00902)
577650.Despr_2992				(PF03692)
577650.Despr_2514				(PF00989)
577650.Despr_2042				(PF01326)
577650.Despr_2417				(PF00989)
577650.Despr_1788				(PF01058)
577650.Despr_2039				(PF03692)
577650.Despr_3140				(PF00037)
577650.Despr_2531				(PF02475)
577650.Despr_1207				(PF16983)
577650.Despr_1205				(PF00989)
577650.Despr_2941				(PF00037)
577650.Despr_0419				(PF03692)
577650.Despr_2012				(PF00037)
577650.Despr_0897				(PF14691)
577650.Despr_2559				(PF03692)
577650.Despr_2950				(PF03692)
577650.Despr_0620				(PF00989)
577650.Despr_1599				(PF01257)
577650.Despr_2813				(PF01326)
577650.Despr_1866				(PF12838)
577650.Despr_1862				(PF01058)
577650.Despr_1907				(PF14691)
577650.Despr_1118				(PF00037)
577650.Despr_1117				(PF00037)
577650.Despr_0608				PF04457
577650.Despr_2127				(PF00037)
577650.Despr_2126				(PF00037)
577650.Despr_2125				(PF01257)
577650.Despr_2128				(PF14691)
577650.Despr_3242				(PF12838)
577650.Despr_0841				(PF00989)
577650.Despr_0012				(PF01058)
577650.Despr_1635				(PF14691)
577650.Despr_0126				(PF00989)
577650.Despr_1732				(PF00989)
577650.Despr_1605				(PF00037)
577650.Despr_0865				(PF01058)
577650.Despr_0869				(PF12838)
577650.Despr_1616				(PF03692)
577650.Despr_0815				(PF03692)
577650.Despr_2888				(PF14691)
577650.Despr_0759				(PF00989)
577650.Despr_1191				(PF00989)
577650.Despr_1197				(PF16561)
577650.Despr_2061				(PF01058)
577650.Despr_2066				(PF01257)
577650.Despr_2067				(PF01257)
577650.Despr_2069				(PF01058)
577650.Despr_2470				(PF00902)
577650.Despr_1357				(PF12838)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================