Effective results for gamma proteobacterium NOR5-3 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 72 proteins (9 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
566466.NOR53_2761				(PF06742) (PF06863)	ER
566466.NOR53_2479				(PF06863) (PF06742)	ER
566466.NOR53_2488				(PF06742) (PF06863)	ER
566466.NOR53_2467				(PF06863) (PF06742)	(ER)
566466.NOR53_2846				(PF06863) (PF06742)	(ER)
566466.NOR53_2610				(PF06863) (PF06742)	(ER); ER
566466.NOR53_1618				(PF03209)	ER
566466.NOR53_2364				(PF11977)	(mitochondrial)
566466.NOR53_351				(PF07969)	(mitochondrial)
566466.NOR53_1273				PF15902	ER
566466.NOR53_2216				PF15902	ER
566466.NOR53_2817				(PF05598)	ER; (ER)
566466.NOR53_649				(PF07969)	(ER)
566466.NOR53_1237				(PF06206)	ER
566466.NOR53_2256				(PF05684)	ER; (ER)
566466.NOR53_2339				(PF11815)	(mitochondrial)
566466.NOR53_481				(PF05684)	ER
566466.NOR53_824				PF15902	ER
566466.NOR53_3691				(PF07969)	ER
566466.NOR53_1924				(PF07969)	ER
566466.NOR53_2311				(PF07969)	ER
566466.NOR53_1353				(PF14248)	ER
566466.NOR53_590				PF15902	ER
566466.NOR53_601				PF15902	ER; (mitochondrial)
566466.NOR53_2111				(PF07969)	mitochondrial
566466.NOR53_638				(PF07969)	(mitochondrial)
566466.NOR53_1374				(PF03209)	ER
566466.NOR53_1713				(PF07969)	ER
566466.NOR53_3708				(PF07168)	ER
566466.NOR53_3140				PF15902	ER
566466.NOR53_1380				(PF07969)	ER
566466.NOR53_2130				(PF14863)	ER
566466.NOR53_1826				PF15902	ER
566466.NOR53_1824				(PF14248)	ER
566466.NOR53_2380				(PF07969)	ER
566466.NOR53_553				(PF00059)	ER
566466.NOR53_2989				(PF14234)	(ER)
566466.NOR53_3194				(PF03209)	(mitochondrial)
566466.NOR53_2596				(PF06742) (PF06863)
566466.NOR53_670				(PF07969)
566466.NOR53_412				(PF07969)
566466.NOR53_3597				PF04733
566466.NOR53_1842				(PF09130)
566466.NOR53_3297				(PF11017)
566466.NOR53_3292				(PF02026)
566466.NOR53_2765				(PF07969)
566466.NOR53_1869				(PF14863)
566466.NOR53_1648				(PF05598)
566466.NOR53_1253				(PF05598)
566466.NOR53_1893				(PF14336)
566466.NOR53_525				(PF11017)
566466.NOR53_2321				(PF12576)
566466.NOR53_2808				(PF14234)
566466.NOR53_498				PF15902
566466.NOR53_2805				(PF06206)
566466.NOR53_3441				(PF05598)
566466.NOR53_3059				(PF07969)
566466.NOR53_1102				(PF05598)
566466.NOR53_1744				(PF05598)
566466.NOR53_1749				(PF05598)
566466.NOR53_2646				(PF06742)
566466.NOR53_1356				(PF11815)
566466.NOR53_1003				(PF13455)
566466.NOR53_2456				(PF05598)
566466.NOR53_3715				(PF14863)
566466.NOR53_3566				(PF05598)
566466.NOR53_932				(PF09130)
566466.NOR53_2720				(PF05598)
566466.NOR53_1701				(PF05598)
566466.NOR53_2439				(PF05598)
566466.NOR53_166				(PF05598)
566466.NOR53_1605				(PF03982)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================