Effective results for Luminiphilus syltensis NOR5-1B (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 61 proteins (4 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
565045.NOR51B_2108				(PF13127)	ER
565045.NOR51B_1633				(PF11815)	(mitochondrial)
565045.NOR51B_400				(PF02931) PF02932	(ER)
565045.NOR51B_1766				PF10277	ER
565045.NOR51B_44				(PF15780)	ER
565045.NOR51B_2339				(PF15780)	(mitochondrial); (plastid)
565045.NOR51B_2338				(PF03209)	ER
565045.NOR51B_522				(PF05684)	ER
565045.NOR51B_1540				(PF05684)	ER
565045.NOR51B_1333				(PF15780)	ER
565045.NOR51B_1295				(PF13577)	(ER)
565045.NOR51B_1353				(PF11815)	(mitochondrial)
565045.NOR51B_657				(PF13577)	(mitochondrial)
565045.NOR51B_2682				(PF03209)	(plastid)
565045.NOR51B_27				(PF12973)
565045.NOR51B_133				(PF13469)
565045.NOR51B_1493				(PF13577)
565045.NOR51B_167				(PF13577)
565045.NOR51B_161				(PF00848)
565045.NOR51B_2595				(PF13469)
565045.NOR51B_900				(PF12973)
565045.NOR51B_902				(PF13469)
565045.NOR51B_1026				(PF06071)	not used
565045.NOR51B_2612				(PF00848)
565045.NOR51B_2290				(PF13577)
565045.NOR51B_2892				(PF13577)
565045.NOR51B_1389				(PF13577)
565045.NOR51B_1384				(PF14336)
565045.NOR51B_721				(PF13469)
565045.NOR51B_2425				(PF13469)
565045.NOR51B_2417				PF11397
565045.NOR51B_122				(PF00848)
565045.NOR51B_2715				(PF00848)
565045.NOR51B_2406				(PF13469)
565045.NOR51B_2899				(PF00848)
565045.NOR51B_1994				(PF13577)
565045.NOR51B_1774				(PF12973)
565045.NOR51B_247				(PF13469)
565045.NOR51B_471				(PF12973)
565045.NOR51B_1084				(PF13577)
565045.NOR51B_644				(PF13577)
565045.NOR51B_2694				(PF12973)
565045.NOR51B_1090				PF11397
565045.NOR51B_2442				(PF00848)
565045.NOR51B_79				(PF03982)
565045.NOR51B_218				(PF13577)
565045.NOR51B_2050				(PF13469)
565045.NOR51B_1058				(PF12973)
565045.NOR51B_183				(PF00848)
565045.NOR51B_1914				(PF13469)
565045.NOR51B_1610				(PF13577)
565045.NOR51B_1118				(PF00848)
565045.NOR51B_2492				(PF00848)
565045.NOR51B_2780				(PF12576)
565045.NOR51B_2786				(PF00848)
565045.NOR51B_954				(PF06071)
565045.NOR51B_2151				(PF13469)
565045.NOR51B_566				(PF00848)
565045.NOR51B_1861				(PF13577)
565045.NOR51B_2014				(PF13577)
565045.NOR51B_2015				(PF13577)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================