Effective results for Kyrpidia tusciae DSM 2912 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 63 proteins (1 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
562970.Btus_1371				(PF07282)	(mitochondrial)
562970.Btus_1797				(PF07282)	(mitochondrial)
562970.Btus_2788				(PF07282)	mitochondrial; (mitochondrial)
562970.Btus_1353				(PF07282)	(mitochondrial)
562970.Btus_2536				(PF07282)	(mitochondrial)
562970.Btus_2383				(PF07282)	(ER)
562970.Btus_2911				(PF07927)	mitochondrial; (mitochondrial)
562970.Btus_2959				(PF07927)	plastid
562970.Btus_2695				(PF07927)	(mitochondrial)
562970.Btus_2029				(PF07282)	(mitochondrial)
562970.Btus_2313				(PF02371)
562970.Btus_0403				PF00261
562970.Btus_0792				(PF05598)
562970.Btus_2490				(PF01597)
562970.Btus_1766				(PF01597)
562970.Btus_2946				(PF13151)
562970.Btus_2943				(PF07927)
562970.Btus_2791				(PF07282)
562970.Btus_1402				(PF02371)
562970.Btus_3036				(PF02371)
562970.Btus_2786				(PF05598)
562970.Btus_2142				(PF00162)
562970.Btus_1894				(PF07282)
562970.Btus_3027				(PF05598)
562970.Btus_1554				(PF02371)
562970.Btus_0205				(PF02371)
562970.Btus_0682				(PF07282)
562970.Btus_1739				(PF07282)
562970.Btus_0857				(PF02371)
562970.Btus_0077				(PF05598)
562970.Btus_3175				(PF05598)
562970.Btus_3176				(PF05598)
562970.Btus_2757				(PF05598)
562970.Btus_2751				(PF02371)
562970.Btus_2745				(PF05598)
562970.Btus_1296				(PF07282)
562970.Btus_1273				(PF07282)
562970.Btus_1275				(PF02371)
562970.Btus_0906				(PF07927)
562970.Btus_0494				(PF05598)
562970.Btus_2263				(PF07282)
562970.Btus_1049				(PF07282)
562970.Btus_0646				(PF05598)
562970.Btus_2721				(PF02371)
562970.Btus_1384				(PF02371)
562970.Btus_2865				(PF00162)
562970.Btus_1396				(PF07282)
562970.Btus_0533				(PF07282)
562970.Btus_0348				(PF05598)
562970.Btus_2051				(PF07282)
562970.Btus_0912				(PF02371)
562970.Btus_0528				(PF07282)
562970.Btus_0832				(PF07282)
562970.Btus_2848				(PF07282)
562970.Btus_1649				(PF07282)
562970.Btus_0356				(PF07282)
562970.Btus_2932				(PF07927)
562970.Btus_3184				(PF07282)
562970.Btus_3180				(PF07282)
562970.Btus_2109				(PF07282)
562970.Btus_1361				(PF05598)
562970.Btus_2489				(PF01597)
562970.Btus_2481				(PF01597)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================