Effective results for Bifidobacterium gallicum DSM 20093 = LMG 11596 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 49 proteins (6 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
561180.BIFGAL_03093				(PF12323) (PF07282)	mitochondrial
561180.BIFGAL_04149				(PF12323) (PF07282)	(mitochondrial); (plastid)
561180.BIFGAL_03113				(PF12323) (PF07282)	mitochondrial
561180.BIFGAL_03931				(PF12323) (PF07282)	(mitochondrial); (plastid)
561180.BIFGAL_03963				(PF05257)	ER; (ER)
561180.BIFGAL_02635				(PF12323) (PF07282)	(mitochondrial)
561180.BIFGAL_03728				(PF05257)	(mitochondrial); (plastid)
561180.BIFGAL_03433				(PF07282)	mitochondrial
561180.BIFGAL_03491				(PF06541)	ER
561180.BIFGAL_02514				PF06422	mitochondrial
561180.BIFGAL_03482				(PF03602)	mitochondrial
561180.BIFGAL_04267				PF03423	ER
561180.BIFGAL_02615				(PF12323) (PF07282)
561180.BIFGAL_03534				(PF12323) (PF07282)
561180.BIFGAL_03404				(PF12323) (PF07282)
561180.BIFGAL_03841				(PF07282)	(mitochondrial)
561180.BIFGAL_04368				(PF12323) (PF07282)
561180.BIFGAL_03925				(PF12323) (PF07282)
561180.BIFGAL_03615				(PF05257)	(plastid)
561180.BIFGAL_03442				(PF12323) (PF07282)
561180.BIFGAL_03427				(PF12323) (PF07282)
561180.BIFGAL_03952				(PF12323) (PF07282)
561180.BIFGAL_02821				(PF12323) (PF07282)
561180.BIFGAL_04327				(PF07282)	(mitochondrial)
561180.BIFGAL_03988				(PF07282)	not used
561180.BIFGAL_04244				(PF01250)
561180.BIFGAL_03434				(PF12323)
561180.BIFGAL_04266				PF03423
561180.BIFGAL_04466				(PF07282)	not used
561180.BIFGAL_02656				(PF06541)
561180.BIFGAL_04378				(PF14336)
561180.BIFGAL_02672				PF03423
561180.BIFGAL_04120				(PF03602)
561180.BIFGAL_04052				(PF06541)
561180.BIFGAL_03905				(PF08354)
561180.BIFGAL_03640				(PF03602)
561180.BIFGAL_02500				(PF07282)	not used
561180.BIFGAL_04130				(PF07282)
561180.BIFGAL_02795				(PF07282)
561180.BIFGAL_03028				(PF05704)
561180.BIFGAL_02991				(PF07282)
561180.BIFGAL_03154				(PF07282)
561180.BIFGAL_03146				(PF05257)
561180.BIFGAL_04440				(PF07282)	not used
561180.BIFGAL_04442				(PF12323)
561180.BIFGAL_04471				(PF01250)	not used
561180.BIFGAL_04268				PF03423
561180.BIFGAL_03162				(PF07282)
561180.BIFGAL_03086				PF04916

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================