Effective results for Haemophilus parasuis SH0165 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
557723.HAPS_1357(PF12762)ER; (ER)
557723.HAPS_0415(PF13455)ER
557723.HAPS_1916(PF12762)(mitochondrial)
557723.HAPS_1921(PF12762)(mitochondrial)
557723.HAPS_0109(PF02371)
557723.HAPS_0924(PF02371)
557723.HAPS_1661(PF02371)
557723.HAPS_1681(PF02371)
557723.HAPS_2093(PF02371)
557723.HAPS_2144(PF02371)
557723.HAPS_1937(PF01245)
557723.HAPS_1494(PF09825)
557723.HAPS_0366(PF02371)
557723.HAPS_1940(PF01245)
557723.HAPS_0347(PF02371)
557723.HAPS_0506(PF02371)
557723.HAPS_1599(PF02371)
557723.HAPS_2104(PF02371)
557723.HAPS_1616PF13859
557723.HAPS_2264(PF12762)
557723.HAPS_0128(PF02371)
557723.HAPS_1600(PF02371)
557723.HAPS_2016(PF02371)
557723.HAPS_1252(PF10571)
557723.HAPS_0057(PF02371)
557723.HAPS_1467(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================