Metamenu

Effective results for Thermosediminibacter oceani DSM 16646 (eggnog40)

Summary

Number of putative secreted proteins: 123
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 123 proteins (27 high, 96 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
555079.Toce_1289(PF13384) (PF00665)(mitochondrial)
555079.Toce_0188(PF13384) (PF00665)(mitochondrial)
555079.Toce_1631(PF13384) (PF00665)(mitochondrial)
555079.Toce_1953(PF13384) (PF00665)(mitochondrial)
555079.Toce_1719(PF01992)(mitochondrial)
555079.Toce_1721(PF00137)ER
555079.Toce_2024(PF00137)ER
555079.Toce_2047(PF01496)(mitochondrial)
555079.Toce_2046(PF00137)ER
555079.Toce_0522(PF05168)(mitochondrial)
555079.Toce_0533(PF00665)ER
555079.Toce_1884(PF00037)mitochondrial
555079.Toce_0703(PF00037)ER
555079.Toce_1724(PF02874) (PF16886)
555079.Toce_1410(PF00665)(mitochondrial)
555079.Toce_2036(PF00665)(mitochondrial)
555079.Toce_2154(PF00665)(mitochondrial)
555079.Toce_0986(PF00665)(mitochondrial)
555079.Toce_1296(PF00665)(mitochondrial)
555079.Toce_2059(PF00665)(mitochondrial)
555079.Toce_1179(PF00665)(mitochondrial)
555079.Toce_0190(PF00665)(mitochondrial)
555079.Toce_2227(PF00665)(mitochondrial)
555079.Toce_2042(PF02874) (PF16886)
555079.Toce_1630(PF00665)(mitochondrial)
555079.Toce_1643(PF00665)(mitochondrial)
555079.Toce_0786(PF00037) (PF02256)
555079.Toce_0303(PF00665)(mitochondrial)
555079.Toce_0537(PF00037) (PF02256)
555079.Toce_0671(PF00665)(mitochondrial)
555079.Toce_1508(PF00665)(mitochondrial)
555079.Toce_0483(PF00665)(mitochondrial)
555079.Toce_0872(PF00665)(mitochondrial)
555079.Toce_0298(PF00665)(mitochondrial)
555079.Toce_0599(PF00665)(mitochondrial)
555079.Toce_0280(PF00665)(mitochondrial)
555079.Toce_1474(PF02971) (PF07837)
555079.Toce_1959(PF00665)(mitochondrial)
555079.Toce_1438(PF13384)
555079.Toce_1098(PF02874)
555079.Toce_1723(PF01991)
555079.Toce_1720(PF01496)
555079.Toce_1726(PF01813)
555079.Toce_1725(PF02874)
555079.Toce_2019(PF02874)
555079.Toce_0719PF05598
555079.Toce_1715PF05598
555079.Toce_1396(PF01409)
555079.Toce_1397(PF01409)
555079.Toce_1091PF05598
555079.Toce_1722(PF01990)
555079.Toce_0543(PF05168)
555079.Toce_0761(PF03063)
555079.Toce_1546PF05598
555079.Toce_0368PF05598
555079.Toce_1564(PF00037)
555079.Toce_0177PF05598
555079.Toce_0379(PF00037)
555079.Toce_1353(PF00037)
555079.Toce_1350PF05598
555079.Toce_1919PF05598
555079.Toce_2021(PF02874)
555079.Toce_1629(PF01695)
555079.Toce_0987(PF01695)
555079.Toce_0189(PF01695)
555079.Toce_1614PF05598
555079.Toce_1297(PF01695)
555079.Toce_1290(PF01695)
555079.Toce_2058(PF01695)
555079.Toce_2051PF05598
555079.Toce_0753PF05598
555079.Toce_1337(PF09419)
555079.Toce_2045(PF01991)
555079.Toce_2044(PF01992)
555079.Toce_2043(PF01990)
555079.Toce_2041(PF02874)
555079.Toce_2040(PF01813)
555079.Toce_0212(PF05168)
555079.Toce_0696(PF00037)
555079.Toce_0697(PF02256)
555079.Toce_0691(PF07085)
555079.Toce_1635PF05598
555079.Toce_0683(PF05168)
555079.Toce_0689(PF07085)
555079.Toce_0335(PF03063)
555079.Toce_0334PF05598
555079.Toce_0783PF05598
555079.Toce_1128PF05598
555079.Toce_1279PF05598
555079.Toce_0536(PF00037)
555079.Toce_0824PF05598
555079.Toce_0228(PF00037)
555079.Toce_1979PF05598
555079.Toce_1468PF05598
555079.Toce_1662(PF03063)
555079.Toce_2263PF05598
555079.Toce_1632(PF01695)
555079.Toce_1472(PF04961)
555079.Toce_1471(PF00037)
555079.Toce_1509(PF01695)
555079.Toce_0482(PF01695)
555079.Toce_0243(PF00037)
555079.Toce_0242(PF00037)
555079.Toce_0800(PF03063)
555079.Toce_0804(PF04961)
555079.Toce_1995PF05598
555079.Toce_1538PF05598
555079.Toce_0299(PF01695)
555079.Toce_1989PF05598
555079.Toce_1525(PF07085)
555079.Toce_1418PF05598
555079.Toce_0867(PF07085)
555079.Toce_0600(PF01695)
555079.Toce_0281(PF01695)
555079.Toce_2228(PF01695)
555079.Toce_1954(PF01695)
555079.Toce_1957(PF00665)
555079.Toce_1958(PF01695)
555079.Toce_0454(PF02933)
555079.Toce_0453(PF00037)
555079.Toce_0929PF05598
555079.Toce_1369PF05598
555079.Toce_0704PF05598

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================