Effective results for Capnocytophaga sputigena ATCC 33612 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 33 proteins (0 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
553177.CAPSP0001_1657				(PF13306)	ER
553177.CAPSP0001_0410				(PF02529)	ER
553177.CAPSP0001_0763				(PF05686)	(mitochondrial)
553177.CAPSP0001_0405				(PF13306)	ER
553177.CAPSP0001_1256				(PF13306)	(mitochondrial)
553177.CAPSP0001_2841				(PF13306)	ER
553177.CAPSP0001_1015				(PF14771)	ER
553177.CAPSP0001_2097				(PF13583)	ER
553177.CAPSP0001_0236				(PF13290)	ER
553177.CAPSP0001_2838				(PF13306)	ER
553177.CAPSP0001_1368				(PF13306)	ER
553177.CAPSP0001_2249				(PF13583)	ER
553177.CAPSP0001_2614				(PF13290)	ER
553177.CAPSP0001_1731				(PF13306)	ER
553177.CAPSP0001_0865				(PF13306)	(mitochondrial)
553177.CAPSP0001_0134				(PF13306)	ER
553177.CAPSP0001_1930				(PF13290)	ER
553177.CAPSP0001_0459				(PF13583)	ER
553177.CAPSP0001_0458				(PF13583)	ER
553177.CAPSP0001_0457				(PF13583)	ER
553177.CAPSP0001_1358				(PF03162)	ER
553177.CAPSP0001_1354				(PF13306)	ER
553177.CAPSP0001_2042				(PF09346)
553177.CAPSP0001_1815				(PF09346)
553177.CAPSP0001_1811				(PF09346)
553177.CAPSP0001_1813				(PF09346)
553177.CAPSP0001_2662				(PF05693)
553177.CAPSP0001_0510				(PF09346)
553177.CAPSP0001_2536				(PF09346)
553177.CAPSP0001_2295				(PF09346)
553177.CAPSP0001_2299				(PF09346)
553177.CAPSP0001_0066				(PF15610)
553177.CAPSP0001_2360				(PF09346)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================