Effective results for Porphyromonas endodontalis ATCC 35406 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
553175.POREN0001_1239				(PF13306)	ER
553175.POREN0001_0161				(PF14771)	ER
553175.POREN0001_0974				(PF13306)	ER
553175.POREN0001_0574				(PF13306)	ER
553175.POREN0001_0371				(PF13306)	ER
553175.POREN0001_0960				(PF13306)	ER
553175.POREN0001_0961				(PF13306)	ER
553175.POREN0001_1124				(PF00112)	ER
553175.POREN0001_2001				(PF13306)	ER
553175.POREN0001_1896				(PF00112)	(ER)
553175.POREN0001_1894				(PF13306)	ER
553175.POREN0001_1098				(PF13306)	ER
553175.POREN0001_0614				(PF13306)	ER
553175.POREN0001_1475				PF12812	ER
553175.POREN0001_1999				(PF13306)	ER
553175.POREN0001_0800				(PF13306)	ER
553175.POREN0001_1212				(PF01823)	ER; (ER)
553175.POREN0001_0972				(PF00112)	(plastid)
553175.POREN0001_0410				(PF01715)	(mitochondrial)
553175.POREN0001_1464				(PF02971) (PF07837)
553175.POREN0001_0973				(PF13306)
553175.POREN0001_1373				(PF02475)
553175.POREN0001_1123				(PF16314)
553175.POREN0001_1122				(PF01715)
553175.POREN0001_2027				(PF13306)
553175.POREN0001_1895				(PF13306)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================