Metamenu

Effective results for Dehalogenimonas lykanthroporepellens BL-DC-9 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 81 proteins (11 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
552811.Dehly_0574PF00091(mitochondrial)
552811.Dehly_0169(PF07927)mitochondrial; (mitochondrial)
552811.Dehly_1441(PF07927)(mitochondrial)
552811.Dehly_0009PF03351ER
552811.Dehly_1170PF06943(ER)
552811.Dehly_1543(PF13276)(mitochondrial)
552811.Dehly_0401(PF05598)(mitochondrial)
552811.Dehly_0578(PF05598)(mitochondrial)
552811.Dehly_1586(PF05598)(mitochondrial)
552811.Dehly_1353(PF13276)(mitochondrial)
552811.Dehly_1661(PF13276)(mitochondrial)
552811.Dehly_0783(PF13276)(mitochondrial)
552811.Dehly_1259(PF13276)(mitochondrial)
552811.Dehly_1251PF11074(mitochondrial)
552811.Dehly_0794(PF04423)(mitochondrial)
552811.Dehly_1304(PF13276)(mitochondrial)
552811.Dehly_0279(PF13276)(mitochondrial)
552811.Dehly_1156(PF05598)(mitochondrial)
552811.Dehly_1419(PF07927)(mitochondrial); not used
552811.Dehly_1522(PF13276)(mitochondrial)
552811.Dehly_1526(PF13276)(mitochondrial)
552811.Dehly_1428(PF05598)(mitochondrial)
552811.Dehly_1559(PF13276)(mitochondrial)
552811.Dehly_1616(PF00872)
552811.Dehly_1618(PF00872)
552811.Dehly_0083(PF05598)
552811.Dehly_0409(PF02915)
552811.Dehly_1378(PF00872)
552811.Dehly_1029(PF02943)
552811.Dehly_1623(PF16565)
552811.Dehly_0180(PF00872)
552811.Dehly_0185(PF07927)
552811.Dehly_1109(PF00872)
552811.Dehly_0212(PF00872)
552811.Dehly_1560(PF00872)
552811.Dehly_1583(PF00872)
552811.Dehly_1036(PF05598)
552811.Dehly_0170(PF05598)
552811.Dehly_0192(PF02915)
552811.Dehly_1352(PF00872)
552811.Dehly_0830PF00091
552811.Dehly_1015(PF00872)
552811.Dehly_0321(PF05598)
552811.Dehly_1256(PF05598)
552811.Dehly_0023(PF00872)
552811.Dehly_1444(PF07927)
552811.Dehly_1440(PF05598)
552811.Dehly_0045(PF10143)
552811.Dehly_0877PF09488
552811.Dehly_0904PF11074
552811.Dehly_1691(PF02732)
552811.Dehly_0480(PF00872)
552811.Dehly_0649(PF05598)
552811.Dehly_0003(PF00872)
552811.Dehly_0466(PF00872)
552811.Dehly_0646(PF00872)
552811.Dehly_0264(PF00872)
552811.Dehly_0261PF03114
552811.Dehly_0864PF00091
552811.Dehly_1515(PF00872)
552811.Dehly_1194(PF02915)
552811.Dehly_1196(PF00872)
552811.Dehly_1191(PF00872)
552811.Dehly_0076(PF05598)
552811.Dehly_0070(PF00872)
552811.Dehly_0293(PF05598)
552811.Dehly_0447(PF13276)
552811.Dehly_0280(PF13276)
552811.Dehly_0284(PF00872)
552811.Dehly_0430(PF00872)
552811.Dehly_0541(PF02915)
552811.Dehly_0543(PF05598)
552811.Dehly_0542(PF00872)
552811.Dehly_1234PF00091
552811.Dehly_1529(PF00872)
552811.Dehly_0607PF00091
552811.Dehly_0955(PF02915)
552811.Dehly_0700(PF10143)
552811.Dehly_0092(PF02915)
552811.Dehly_0389(PF05598)
552811.Dehly_0148(PF07927)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================