Metamenu

Effective results for Ruminococcaceae bacterium D16 (eggnog40)

Summary

Number of putative secreted proteins: 113
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 113 proteins (16 high, 97 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
552398.HMPREF0866_02805(PF01131) (PF01751)(ER)
552398.HMPREF0866_01333(PF01131) (PF01751)mitochondrial; (mitochondrial)
552398.HMPREF0866_00720(PF00395)ER
552398.HMPREF0866_01096(PF00395)ER
552398.HMPREF0866_02165(PF00395)ER
552398.HMPREF0866_01367(PF00395)ER
552398.HMPREF0866_02178(PF00395)ER
552398.HMPREF0866_02174(PF00395)ER
552398.HMPREF0866_02176(PF00395)ER
552398.HMPREF0866_02170(PF00395)ER
552398.HMPREF0866_02577(PF00842)(mitochondrial)
552398.HMPREF0866_01574(PF00395)ER
552398.HMPREF0866_02088(PF00395)ER
552398.HMPREF0866_01148(PF00395)ER
552398.HMPREF0866_01363(PF03600)ER
552398.HMPREF0866_01369(PF01554)ER
552398.HMPREF0866_02368(PF03600)ER
552398.HMPREF0866_00387(PF01554)(ER)
552398.HMPREF0866_01905(PF03266)mitochondrial; (mitochondrial)
552398.HMPREF0866_02182(PF00395)ER
552398.HMPREF0866_02915(PF01554)(ER)
552398.HMPREF0866_03085(PF00395)ER
552398.HMPREF0866_00180(PF06541)ER
552398.HMPREF0866_01108(PF00395)ER
552398.HMPREF0866_01324(PF06541)ER
552398.HMPREF0866_01744(PF01554)(ER)
552398.HMPREF0866_01489(PF01554)mitochondrial
552398.HMPREF0866_02661(PF03600)ER
552398.HMPREF0866_01012(PF03600)ER
552398.HMPREF0866_01655(PF00395)ER
552398.HMPREF0866_01870(PF01554)(mitochondrial)
552398.HMPREF0866_02643(PF03600)ER
552398.HMPREF0866_02640(PF03600)ER
552398.HMPREF0866_02795PF03432(mitochondrial); mitochondrial
552398.HMPREF0866_02886(PF01554)ER
552398.HMPREF0866_00235(PF06541)ER
552398.HMPREF0866_02521(PF00395)(mitochondrial)
552398.HMPREF0866_02190(PF00395)ER
552398.HMPREF0866_00816(PF03959)(ER); mitochondrial
552398.HMPREF0866_02180(PF00395)ER
552398.HMPREF0866_02188(PF00395)ER
552398.HMPREF0866_00484(PF14249)(mitochondrial)
552398.HMPREF0866_02192(PF00395)ER
552398.HMPREF0866_03173(PF01131) (PF01751)(mitochondrial)
552398.HMPREF0866_02972PF05063(mitochondrial)
552398.HMPREF0866_02944(PF01554)(ER)
552398.HMPREF0866_00364(PF03946)(mitochondrial); not used
552398.HMPREF0866_00363(PF03946)(mitochondrial)
552398.HMPREF0866_01342PF05063(mitochondrial)
552398.HMPREF0866_01255(PF00395)(mitochondrial)
552398.HMPREF0866_01794(PF01554)(ER)
552398.HMPREF0866_01494(PF01554)(mitochondrial)
552398.HMPREF0866_02460(PF01131) (PF01751)
552398.HMPREF0866_02951PF03432(mitochondrial)
552398.HMPREF0866_01524(PF07837) (PF02971)
552398.HMPREF0866_01235(PF01131) (PF01751)
552398.HMPREF0866_02964(PF01131) (PF01751)
552398.HMPREF0866_03000(PF01131) (PF01751)
552398.HMPREF0866_01721(PF03600)
552398.HMPREF0866_02014(PF09359)
552398.HMPREF0866_02147(PF01554)
552398.HMPREF0866_00041(PF01991)
552398.HMPREF0866_01156(PF00395)
552398.HMPREF0866_02579(PF01624)
552398.HMPREF0866_01976(PF00842)
552398.HMPREF0866_02717PF03432
552398.HMPREF0866_03156(PF01661)
552398.HMPREF0866_03151PF03432
552398.HMPREF0866_00081PF03432
552398.HMPREF0866_02030(PF01661)
552398.HMPREF0866_02033(PF09359)
552398.HMPREF0866_02553(PF01751)
552398.HMPREF0866_02737PF03432
552398.HMPREF0866_00893PF03432
552398.HMPREF0866_01765(PF00395)
552398.HMPREF0866_02233PF05063not used
552398.HMPREF0866_03054(PF00395)not used
552398.HMPREF0866_00880(PF01554)
552398.HMPREF0866_00171(PF00395)
552398.HMPREF0866_01981(PF12437)
552398.HMPREF0866_01114(PF01807)
552398.HMPREF0866_01629PF05063
552398.HMPREF0866_01331(PF01807)
552398.HMPREF0866_02450PF05063
552398.HMPREF0866_00400(PF00842)
552398.HMPREF0866_01795(PF12646)
552398.HMPREF0866_01315(PF01751)
552398.HMPREF0866_02118(PF00395)
552398.HMPREF0866_02119(PF00395)
552398.HMPREF0866_02111(PF00395)
552398.HMPREF0866_01867(PF00842)
552398.HMPREF0866_02069(PF01807)
552398.HMPREF0866_00210(PF01554)
552398.HMPREF0866_02463(PF01624)
552398.HMPREF0866_02329(PF00395)
552398.HMPREF0866_00313(PF00958)
552398.HMPREF0866_01192(PF01554)
552398.HMPREF0866_01531(PF01268)not used
552398.HMPREF0866_01532(PF01268)
552398.HMPREF0866_01991(PF00958)
552398.HMPREF0866_01228(PF01268)
552398.HMPREF0866_02245(PF00395)
552398.HMPREF0866_03208(PF01661)
552398.HMPREF0866_03202PF03432
552398.HMPREF0866_02436PF03432
552398.HMPREF0866_00489(PF01554)
552398.HMPREF0866_02961(PF01624)
552398.HMPREF0866_02588PF03179
552398.HMPREF0866_01730(PF01554)
552398.HMPREF0866_02995PF03432
552398.HMPREF0866_03171(PF01807)
552398.HMPREF0866_00478(PF12437)
552398.HMPREF0866_00617(PF01661)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================