Metamenu

Effective results for Neisseria sicca ATCC 29256 (eggnog40)

Summary

Number of putative secreted proteins: 60
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 60 proteins (0 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
547045.NEISICOT_01525(PF13518)mitochondrial
547045.NEISICOT_00127(PF13429)ER
547045.NEISICOT_03486(PF13518)mitochondrial
547045.NEISICOT_00113(PF01609)(mitochondrial)
547045.NEISICOT_03299(PF08238)ER
547045.NEISICOT_00817(PF13518)mitochondrial
547045.NEISICOT_01185(PF08238)ER
547045.NEISICOT_01188(PF08238)ER
547045.NEISICOT_00740(PF00209)ER
547045.NEISICOT_03135(PF13518)mitochondrial
547045.NEISICOT_02712(PF13518)mitochondrial
547045.NEISICOT_00719(PF13518)mitochondrial
547045.NEISICOT_00632(PF05598) (PF01609)(plastid)
547045.NEISICOT_03089(PF13518)mitochondrial
547045.NEISICOT_02171(PF13429)ER
547045.NEISICOT_00739(PF00209)ER; (ER)
547045.NEISICOT_03696(PF05598) (PF01609)(plastid)
547045.NEISICOT_00897(PF08238)ER
547045.NEISICOT_01685(PF13518)mitochondrial
547045.NEISICOT_02781(PF05598) (PF01609)(plastid)
547045.NEISICOT_00129(PF00209)(ER)
547045.NEISICOT_03660(PF05598)(plastid)
547045.NEISICOT_00110(PF05598)(plastid)
547045.NEISICOT_03272(PF05598)(plastid)
547045.NEISICOT_00819(PF05598)(plastid)
547045.NEISICOT_00101(PF05598) (PF01609)
547045.NEISICOT_01196(PF05598)(plastid)
547045.NEISICOT_03431(PF05598)(plastid)
547045.NEISICOT_02762(PF09511)(mitochondrial)
547045.NEISICOT_00615(PF05598)(plastid)
547045.NEISICOT_02755(PF14413) (PF04446)
547045.NEISICOT_03507(PF05598)(plastid)
547045.NEISICOT_00084(PF05598)(plastid)
547045.NEISICOT_03521(PF00209)(ER)
547045.NEISICOT_03302(PF08238)(ER)
547045.NEISICOT_03644(PF01609)
547045.NEISICOT_02697(PF01609)
547045.NEISICOT_00596(PF11969)
547045.NEISICOT_03273(PF01609)
547045.NEISICOT_01187(PF08238)
547045.NEISICOT_01186(PF08238)
547045.NEISICOT_01189(PF08238)not used
547045.NEISICOT_01197(PF01609)
547045.NEISICOT_02551(PF08238)
547045.NEISICOT_03705(PF01609)not used
547045.NEISICOT_02547(PF01609)
547045.NEISICOT_03714(PF05598)
547045.NEISICOT_03362(PF01609)
547045.NEISICOT_02176(PF13518)
547045.NEISICOT_02910(PF08238)
547045.NEISICOT_01025(PF04127)
547045.NEISICOT_01023(PF04127)
547045.NEISICOT_01588(PF03162)
547045.NEISICOT_00616(PF01609)
547045.NEISICOT_00086(PF01609)
547045.NEISICOT_03695(PF01609)not used
547045.NEISICOT_02034(PF01609)
547045.NEISICOT_02322(PF08238)
547045.NEISICOT_03520(PF00209)
547045.NEISICOT_03300(PF08238)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================