Effective results for Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 28 proteins (10 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
547043.BIFPSEUDO_04063				(PF12051)	mitochondrial
547043.BIFPSEUDO_04128				(PF12051)	(mitochondrial)
547043.BIFPSEUDO_04138				(PF03629)	ER
547043.BIFPSEUDO_03321				(PF00686)	mitochondrial
547043.BIFPSEUDO_03811				(PF06541)	ER
547043.BIFPSEUDO_03810				(PF06541)	(mitochondrial)
547043.BIFPSEUDO_03311				(PF00686)	(mitochondrial)
547043.BIFPSEUDO_04489				PF08719	not used
547043.BIFPSEUDO_04481				PF13151
547043.BIFPSEUDO_04480				PF08719	not used
547043.BIFPSEUDO_04483				PF08719
547043.BIFPSEUDO_02712				(PF08354)
547043.BIFPSEUDO_04129				(PF06541)
547043.BIFPSEUDO_02694				(PF03051)
547043.BIFPSEUDO_03678				(PF03051)
547043.BIFPSEUDO_03267				(PF05704)
547043.BIFPSEUDO_03864				(PF03051)
547043.BIFPSEUDO_02491				(PF03629)
547043.BIFPSEUDO_04089				(PF03629)
547043.BIFPSEUDO_02469				(PF03629)
547043.BIFPSEUDO_04451				PF08719	not used
547043.BIFPSEUDO_03729				(PF01704)
547043.BIFPSEUDO_03728				(PF01704)
547043.BIFPSEUDO_02584				PF08213	not used
547043.BIFPSEUDO_03405				PF08719
547043.BIFPSEUDO_03407				PF13151
547043.BIFPSEUDO_03403				PF13151	not used
547043.BIFPSEUDO_04477				PF13151

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================