Effective results for Candidatus Liberibacter asiaticus str. psy62 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 56
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 14 proteins (0 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
537021.CLIBASIA_01355			+		(mitochondrial)
537021.CLIBASIA_00420			+		ER
537021.CLIBASIA_00455			+		(mitochondrial)
537021.CLIBASIA_04115			+		ER
537021.CLIBASIA_03175			+		(mitochondrial)
537021.CLIBASIA_00735			+		(mitochondrial)
537021.CLIBASIA_04580			+		ER
537021.CLIBASIA_04265			+		ER
537021.CLIBASIA_04410			+		ER
537021.CLIBASIA_00405			+		ER
537021.CLIBASIA_02075			+		ER
537021.CLIBASIA_05000			+		ER
537021.CLIBASIA_04675			+		ER
537021.CLIBASIA_03230			+		ER
537021.CLIBASIA_03800				(PF06455)	ER
537021.CLIBASIA_02145			+		ER
537021.CLIBASIA_04685			+		mitochondrial
537021.CLIBASIA_05660				(PF08707)	(mitochondrial)
537021.CLIBASIA_05520				(PF00625)	plastid
537021.CLIBASIA_03610			+		(mitochondrial)
537021.CLIBASIA_00055				(PF00625)	plastid
537021.CLIBASIA_01365			+
537021.CLIBASIA_03700				(PF00268)
537021.CLIBASIA_03865			+
537021.CLIBASIA_01455			+
537021.CLIBASIA_05395				(PF01653)
537021.CLIBASIA_05625			+
537021.CLIBASIA_02620			+
537021.CLIBASIA_04325				(PF00268)
537021.CLIBASIA_00075				(PF00268)
537021.CLIBASIA_04180			+
537021.CLIBASIA_04595			+
537021.CLIBASIA_04555			+
537021.CLIBASIA_04655				(PF01442)
537021.CLIBASIA_01515			+
537021.CLIBASIA_04155			+
537021.CLIBASIA_02945			+
537021.CLIBASIA_04045				(PF00625)
537021.CLIBASIA_05485				(PF08707)
537021.CLIBASIA_02500			+
537021.CLIBASIA_02820			+
537021.CLIBASIA_05415			+
537021.CLIBASIA_02215			+
537021.CLIBASIA_00535			+
537021.CLIBASIA_01720			+
537021.CLIBASIA_00050				(PF01653)
537021.CLIBASIA_00900			+
537021.CLIBASIA_03970			+
537021.CLIBASIA_05515				(PF01653)
537021.CLIBASIA_02255			+
537021.CLIBASIA_03185			+
537021.CLIBASIA_03580			+
537021.CLIBASIA_03335			+
537021.CLIBASIA_04405			+
537021.CLIBASIA_01585			+
537021.CLIBASIA_04535				(PF00268)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================