Metamenu

Effective results for Acidimicrobium ferrooxidans DSM 10331 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 50 proteins (0 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525909.Afer_1986(PF01828)ER; (ER)
525909.Afer_1170(PF01828)ER
525909.Afer_0978(PF13276)(mitochondrial)
525909.Afer_2010(PF10013)(mitochondrial)
525909.Afer_2014(PF13276)(mitochondrial)
525909.Afer_0519(PF13276)
525909.Afer_1485(PF01527)
525909.Afer_1486(PF13276)
525909.Afer_0510(PF13276)
525909.Afer_0690(PF01527)
525909.Afer_0678(PF01527)
525909.Afer_0674(PF01527)
525909.Afer_0673(PF13276)
525909.Afer_0068(PF13276)
525909.Afer_0067(PF01527)
525909.Afer_0447(PF13276)
525909.Afer_0446(PF01527)
525909.Afer_0663(PF01527)
525909.Afer_0662(PF13276)
525909.Afer_0278(PF01527)
525909.Afer_0277(PF13276)
525909.Afer_0258(PF00454)
525909.Afer_1973(PF01527)
525909.Afer_0691(PF13276)
525909.Afer_1319(PF13276)
525909.Afer_1315(PF01527)
525909.Afer_1316(PF13276)
525909.Afer_0687(PF13276)
525909.Afer_1774(PF01527)
525909.Afer_1775(PF13276)
525909.Afer_0329(PF07837)
525909.Afer_1894(PF01527)
525909.Afer_0974(PF01597)
525909.Afer_0973(PF01597)
525909.Afer_0979(PF13276)
525909.Afer_0550(PF01527)
525909.Afer_0154(PF13276)
525909.Afer_0153(PF01527)
525909.Afer_2015(PF01527)
525909.Afer_0301(PF13276)
525909.Afer_0302(PF01527)
525909.Afer_0520(PF01527)
525909.Afer_1320(PF01527)
525909.Afer_1863(PF01527)
525909.Afer_0980(PF01527)
525909.Afer_0981(PF01527)
525909.Afer_1051(PF13276)
525909.Afer_0509(PF01527)
525909.Afer_1055(PF01597)
525909.Afer_1124(PF01597)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================