Effective results for Caldicellulosiruptor bescii DSM 6725 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
521460.Athe_0618				(PF00331)	ER
521460.Athe_0610				(PF00686)	ER
521460.Athe_0609				(PF00686)	ER
521460.Athe_2561				(PF00415)	(mitochondrial)
521460.Athe_0956				(PF00415)	ER
521460.Athe_1857				(PF00331)	ER
521460.Athe_0183				(PF00331)	ER
521460.Athe_0177				(PF04893)	mitochondrial; (mitochondrial)
521460.Athe_1938				(PF16661)	(plastid)
521460.Athe_2724				(PF00331)
521460.Athe_0246				PF14712
521460.Athe_2094				(PF17132)
521460.Athe_2612				(PF04893)
521460.Athe_2565				(PF00415)
521460.Athe_2569				(PF00415)
521460.Athe_2404				PF11443
521460.Athe_0108				(PF04893)
521460.Athe_1277				(PF16661)
521460.Athe_1890				(PF09419)
521460.Athe_0090				(PF10462)
521460.Athe_2076				(PF17132)
521460.Athe_0185				(PF00331)
521460.Athe_2581				(PF17132)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================