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Genomes encoding eukaryotic-like proteins

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PF00415 Regulator of chromosome condensation (RCC1) repeat

Copy number in non-pathogens:
Mean=0.17 Stddev=0.82

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Legionella pneumophila s 4 4
Legionella pneumophila s 4 4
Kutzneria sp. 744 s 12 10
Paenibacillus sp. HGF5 s 4 4
Sphaerochaeta coccoides DSM 17374 s 47 39
Acidovorax sp. CF316 s 5 5
Bifidobacterium sp. 7101 s 14 12
Bifidobacterium sp. A11 s 23 19
Stigmatella aurantiaca DW4/3-1 s 7 6
Microbacterium sp. oral taxon 186 str. F0373 s 4 4
Salinispora pacifica CNT084 s 10 9
Salinispora pacifica CNT001 s 19 16
Salinispora arenicola CNX482 s 18 15
Salinispora arenicola CNR921 s 18 15
Salinispora pacifica CNS103 s 15 13
Salinispora arenicola CNX508 s 16 14
Salinispora arenicola CNT005 s 21 18
Salinispora arenicola CNH905 s 16 14
Salinispora arenicola CNT800 s 15 13
Paenibacillus mucilaginosus 3016 s 7 6
Stigmatella aurantiaca DW4/3-1 s 8 7
Bifidobacterium asteroides PRL2011 s 24 20
Legionella pneumophila subsp. pneumophila s 4 4
Bifidobacterium coryneforme s 10 9
Bifidobacterium asteroides s 27 23
Bifidobacterium asteroides s 16 14
Bifidobacterium coryneforme s 10 9
Bifidobacterium asteroides s 18 15
Legionella pneumophila s 4 4
Legionella pneumophila s 4 4
Stigmatella aurantiaca s 23 19
Paenibacillus odorifer s 7 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

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