Effective results for Capnocytophaga ochracea DSM 7271 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
521097.Coch_1337				(PF13306)	ER
521097.Coch_0063				(PF13290)	ER
521097.Coch_0500				(PF06414)	(mitochondrial)
521097.Coch_0732				PF03083	ER
521097.Coch_1923				PF03083	(ER)
521097.Coch_1524				(PF03162)	ER
521097.Coch_2160				(PF13290)	ER
521097.Coch_0940				(PF13306)	ER
521097.Coch_0947				(PF13306)	ER
521097.Coch_0946				(PF13306)	ER
521097.Coch_0948				(PF13306)	ER
521097.Coch_1443				(PF13306)	ER
521097.Coch_0419				(PF13306)	ER
521097.Coch_0300				(PF14771)	ER
521097.Coch_0772				PF03083	ER
521097.Coch_0357				(PF13583)	ER
521097.Coch_0358				(PF13583)	ER
521097.Coch_0359				(PF13583)	ER
521097.Coch_0168				(PF13306)	ER
521097.Coch_1350				(PF13290)	ER
521097.Coch_1036				(PF13306)	ER
521097.Coch_0033				(PF02494)	ER
521097.Coch_1586				(PF13583)	(plastid)
521097.Coch_1865				(PF13306)	(mitochondrial)
521097.Coch_1336				(PF02494)
521097.Coch_1525				(PF13306)
521097.Coch_1885				(PF08357)
521097.Coch_1285				(PF05693)
521097.Coch_0360				(PF06414)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================