Effective results for Marinomonas posidonica IVIA-Po-181 (eggnog40)
Summary
Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 23 proteins (3 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
491952.Mar181_0688 | (PF00909) | (ER) | |||
491952.Mar181_2509 | (PF00909) | ER; (ER) | |||
491952.Mar181_0331 | (PF00909) | ER | |||
491952.Mar181_1121 | PF01283 | ER | |||
491952.Mar181_2225 | (PF13332) | mitochondrial; (mitochondrial) | |||
491952.Mar181_0534 | (PF00909) | (ER) | |||
491952.Mar181_1813 | (PF13332) | mitochondrial; (mitochondrial) | |||
491952.Mar181_1819 | (PF13332) | mitochondrial; (mitochondrial) | |||
491952.Mar181_0771 | (PF05686) | (mitochondrial) | |||
491952.Mar181_0860 | (PF07386) | ER | |||
491952.Mar181_1948 | PF15753 | ER | |||
491952.Mar181_2151 | (PF03662) | (mitochondrial) | |||
491952.Mar181_0486 | (PF04724) | (ER) | |||
491952.Mar181_1515 | (PF07386) | ER | |||
491952.Mar181_3112 | (PF00909) | ER | |||
491952.Mar181_2211 | (PF07386) | ||||
491952.Mar181_1564 | (PF12038) | ||||
491952.Mar181_3082 | (PF00909) | ||||
491952.Mar181_2149 | (PF00026) | ||||
491952.Mar181_0485 | PF11913 | ||||
491952.Mar181_0482 | (PF04724) | ||||
491952.Mar181_1314 | (PF03538) | ||||
491952.Mar181_1315 | (PF12255) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.75 (14/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.75 (14/8 KEGG proteins)