Metamenu

Effective results for Francisella philomiragia subsp. philomiragia ATCC 25017 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 96 proteins (60 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
484022.Fphi_0649PF03222(ER); ER
484022.Fphi_0808PF03222(ER)
484022.Fphi_1669(PF01346)ER
484022.Fphi_1668(PF01346)ER
484022.Fphi_0828(PF07168)ER
484022.Fphi_1380(PF02275)ER; (ER)
484022.Fphi_1499PF03222(ER)
484022.Fphi_1656(PF07224)ER
484022.Fphi_1727(PF00854)ER; (ER)
484022.Fphi_1123PF03222(ER)
484022.Fphi_0733PF03222mitochondrial
484022.Fphi_1131PF03222(mitochondrial)
484022.Fphi_0346PF03222ER
484022.Fphi_0751(PF09419)mitochondrial
484022.Fphi_0374(PF02931)ER
484022.Fphi_1696(PF01346)ER
484022.Fphi_1694(PF01346)ER
484022.Fphi_1693(PF04193)ER
484022.Fphi_1561(PF00854)ER
484022.Fphi_1590(PF00854)mitochondrial; (ER)
484022.Fphi_1782(PF00854)(ER)
484022.Fphi_0434(PF04193)(ER)
484022.Fphi_0891PF03222ER
484022.Fphi_0334(PF00657)ER
484022.Fphi_1412(PF00854)ER; (ER)
484022.Fphi_0851(PF01346)ER
484022.Fphi_0918(PF00657)ER
484022.Fphi_1328(PF02275)ER
484022.Fphi_0694(PF04488)mitochondrial; (mitochondrial)
484022.Fphi_1184PF00665 PF13936
484022.Fphi_0906PF00665 PF13936
484022.Fphi_0061PF00665 PF13936
484022.Fphi_1608PF00665 PF13936
484022.Fphi_1192PF00665 PF13936
484022.Fphi_0809PF00665 PF13936
484022.Fphi_1859PF00665 PF13936
484022.Fphi_0119PF00665 PF13936
484022.Fphi_0324PF00665 PF13936
484022.Fphi_1066PF03222(ER)
484022.Fphi_1276(PF01000) (PF01193)
484022.Fphi_0709PF00665 PF13936
484022.Fphi_0182PF00665 PF13936
484022.Fphi_0189PF00665 PF13936
484022.Fphi_1120PF00665 PF13936
484022.Fphi_0281(PF00854)(ER)
484022.Fphi_1741PF00665 PF13936
484022.Fphi_0196PF00665 PF13936
484022.Fphi_1750PF00665 PF13936
484022.Fphi_0979PF00665 PF13936
484022.Fphi_0371PF00665 PF13936
484022.Fphi_1560PF00665 PF13936
484022.Fphi_0563(PF01000) (PF01193)
484022.Fphi_0987PF00665 PF13936
484022.Fphi_0085PF00665 PF13936
484022.Fphi_0789PF00665 PF13936
484022.Fphi_0432PF00665 PF13936
484022.Fphi_0306PF00665 PF13936
484022.Fphi_1553PF00665 PF13936
484022.Fphi_0846PF00665 PF13936
484022.Fphi_1306PF00665 PF13936
484022.Fphi_0140PF00665 PF13936
484022.Fphi_1527PF00665 PF13936
484022.Fphi_1523PF00665 PF13936
484022.Fphi_1890PF00665 PF13936
484022.Fphi_0852PF00665 PF13936
484022.Fphi_0856PF00665 PF13936
484022.Fphi_0210PF00665 PF13936
484022.Fphi_0139PF00665 PF13936
484022.Fphi_0047PF00665 PF13936
484022.Fphi_1884PF00665 PF13936
484022.Fphi_1881PF00665 PF13936
484022.Fphi_1500PF00665 PF13936
484022.Fphi_0058PF00665 PF13936
484022.Fphi_1506PF00665 PF13936
484022.Fphi_0670PF00665 PF13936
484022.Fphi_0478PF00665 PF13936
484022.Fphi_1297(PF13661)
484022.Fphi_1428(PF04488)
484022.Fphi_0253(PF00854)
484022.Fphi_1498PF03222
484022.Fphi_1659(PF02275)
484022.Fphi_1394PF13936
484022.Fphi_1392PF00665
484022.Fphi_0299(PF00854)
484022.Fphi_0402(PF00657)
484022.Fphi_0985PF13936
484022.Fphi_0984PF00665
484022.Fphi_0773(PF00854)
484022.Fphi_0790(PF00657)
484022.Fphi_0798PF13936
484022.Fphi_0799PF00665
484022.Fphi_0435(PF04193)
484022.Fphi_1828(PF13455)
484022.Fphi_0218PF03222
484022.Fphi_0132(PF00854)
484022.Fphi_0460(PF10013)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================