Effective results for Thermomonospora curvata DSM 43183 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (2 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
471852.Tcur_3072(PF05257)(mitochondrial)
471852.Tcur_0390(PF12695)ER
471852.Tcur_1278(PF12695)ER
471852.Tcur_4623(PF12695)mitochondrial
471852.Tcur_3175(PF01419)(mitochondrial)
471852.Tcur_0496(PF06241)mitochondrial
471852.Tcur_3405(PF05076)
471852.Tcur_3625(PF01135)
471852.Tcur_1369(PF05257)
471852.Tcur_4449PF08213not used
471852.Tcur_1966(PF09265)
471852.Tcur_0749(PF01135)
471852.Tcur_0740(PF05076)
471852.Tcur_1929(PF00755)
471852.Tcur_0183(PF13768)
471852.Tcur_2802(PF04107)
471852.Tcur_0237(PF01025)
471852.Tcur_3294(PF03161)
471852.Tcur_2073(PF05257)
471852.Tcur_0400(PF13768)
471852.Tcur_2824(PF15891)
471852.Tcur_3384(PF04107)
471852.Tcur_4708(PF05076)
471852.Tcur_3869PF12873
471852.Tcur_3641(PF04107)
471852.Tcur_1394(PF01025)
471852.Tcur_4611(PF01135)
471852.Tcur_0132(PF01135)
471852.Tcur_1874(PF01025)
471852.Tcur_4753(PF04107)
471852.Tcur_3764(PF01135)
471852.Tcur_0805(PF03803)
471852.Tcur_3775(PF01135)
471852.Tcur_4645(PF01135)
471852.Tcur_0322(PF00102)
471852.Tcur_0037(PF05257)
471852.Tcur_0925(PF01135)
471852.Tcur_0736(PF05076)
471852.Tcur_2448(PF04107)
471852.Tcur_0780(PF11977)
471852.Tcur_4200(PF04107)
471852.Tcur_4515(PF13768)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================