Effective results for Glaciecola sp. HTCC2999 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 35 proteins (8 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
455436.GHTCC_010100005674				(PF05592) (PF08531)	mitochondrial
455436.GHTCC_010100001419				(PF05592) (PF08531)	mitochondrial
455436.GHTCC_010100005684				(PF05592) (PF08531)	ER
455436.GHTCC_010100004363				(PF05592) (PF08531)	ER
455436.GHTCC_010100008956				(PF05592) (PF08531)	ER
455436.GHTCC_010100001394				(PF17132)	ER
455436.GHTCC_010100004413				PF15892	(ER); ER
455436.GHTCC_010100004333				(PF14099)	ER
455436.GHTCC_010100004338				PF15892	ER
455436.GHTCC_010100008926				PF15892	ER
455436.GHTCC_010100004318				PF15892	ER
455436.GHTCC_010100008946				(PF17132)	ER
455436.GHTCC_010100004453				PF15892	ER
455436.GHTCC_010100004378				PF15892	(mitochondrial); (plastid)
455436.GHTCC_010100004343				(PF17132)	ER
455436.GHTCC_010100001399				(PF05592) (PF08531)
455436.GHTCC_010100005614				(PF13276)	(mitochondrial)
455436.GHTCC_010100009061				(PF13276)	(mitochondrial)
455436.GHTCC_010100009076				(PF05592) (PF08531)
455436.GHTCC_010100005170				(PF13276)	(mitochondrial)
455436.GHTCC_010100010833				(PF13276)	(mitochondrial)
455436.GHTCC_010100003904				(PF13276)	(mitochondrial)
455436.GHTCC_010100009526				(PF13276)	(mitochondrial)
455436.GHTCC_010100005357				(PF13276)	(mitochondrial)
455436.GHTCC_010100001369				(PF13276)	(mitochondrial)
455436.GHTCC_010100001409				(PF17132)
455436.GHTCC_010100001414				(PF05592)
455436.GHTCC_010100006817				(PF13276)
455436.GHTCC_010100009021				PF15892
455436.GHTCC_010100006244				(PF10013)	not used
455436.GHTCC_010100004243				PF15892
455436.GHTCC_010100006587				(PF13276)
455436.GHTCC_010100009980				(PF02460)
455436.GHTCC_010100005689				(PF17132)
455436.GHTCC_010100008931				(PF14099)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================