Effective results for Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 39 proteins (6 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
446468.Ndas_0957				(PF01094)	ER
446468.Ndas_1735				PF12483	(ER); plastid
446468.Ndas_0481				(PF08386)	ER; (ER)
446468.Ndas_1606				(PF08326)	mitochondrial; (mitochondrial)
446468.Ndas_2980				(PF08386)	ER
446468.Ndas_3880				(PF14021)	ER
446468.Ndas_1723				(PF08386)	ER
446468.Ndas_3616				(PF08386)	ER
446468.Ndas_4219				(PF08386)	ER
446468.Ndas_4340				PF12483	ER
446468.Ndas_2626				(PF09683)	ER
446468.Ndas_3393				(PF08309)	mitochondrial
446468.Ndas_3395				(PF08309)	(ER)
446468.Ndas_0452				(PF17042) (PF07005)
446468.Ndas_2332				(PF17042) (PF07005)
446468.Ndas_1450				PF13405 (PF13499)
446468.Ndas_3444				(PF08386)	(ER)
446468.Ndas_4327				(PF07224)	(ER)
446468.Ndas_2857				(PF08386)	(mitochondrial)
446468.Ndas_2454				(PF17042) (PF07005)
446468.Ndas_2623				(PF17042) (PF07005)
446468.Ndas_1449				(PF13499)
446468.Ndas_3178				(PF04505)
446468.Ndas_3176				(PF04505)
446468.Ndas_4567				(PF11338)
446468.Ndas_4838				PF05204
446468.Ndas_3812				(PF13499)
446468.Ndas_4357				PF08213	not used
446468.Ndas_4218				(PF13499)
446468.Ndas_2307				(PF11338)
446468.Ndas_1148				(PF16715)
446468.Ndas_4795				(PF09359)
446468.Ndas_4618				(PF14021)
446468.Ndas_1740				(PF08392)
446468.Ndas_2599				(PF09414)
446468.Ndas_1815				(PF09359)
446468.Ndas_2735				PF00641
446468.Ndas_0195				(PF09414)
446468.Ndas_3394				(PF08309)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================