Effective results for Neorickettsia risticii str. Illinois (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 42
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 3 proteins (1 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
434131.NRI_0379				PF02326	ER; (plastid)
434131.NRI_0100			+		ER
434131.NRI_0145			+		(ER)
434131.NRI_0194			+		(mitochondrial)
434131.NRI_0649			+		ER
434131.NRI_0402			+		ER
434131.NRI_0141			+		ER
434131.NRI_0701			+		ER
434131.NRI_0002			+		(mitochondrial)
434131.NRI_0891			+		(mitochondrial)
434131.NRI_0103			+		ER
434131.NRI_0641			+		ER
434131.NRI_0545			+		(mitochondrial)
434131.NRI_0626			+		(mitochondrial)
434131.NRI_0829			+		(ER)
434131.NRI_0653				(PF00623)
434131.NRI_0654				(PF00623)
434131.NRI_0068			+
434131.NRI_0846			+
434131.NRI_0442			+
434131.NRI_0578			+
434131.NRI_0915			+
434131.NRI_0072			+
434131.NRI_0828			+
434131.NRI_0420			+
434131.NRI_0580			+
434131.NRI_0481			+
434131.NRI_0412			+
434131.NRI_0306			+
434131.NRI_0017			+
434131.NRI_0515			+
434131.NRI_0516			+
434131.NRI_0349			+
434131.NRI_0463			+
434131.NRI_0763			+
434131.NRI_0119			+
434131.NRI_0290			+
434131.NRI_0793			+
434131.NRI_0387			+
434131.NRI_0870			+
434131.NRI_0022			+
434131.NRI_0293			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.3 (13/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================