Effective results for Thiomonas arsenitoxydans (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 72 proteins (3 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
426114.THI_2342(PF04143)(ER)
426114.THI_2341(PF04143)ER
426114.THI_2394(PF11563)mitochondrial
426114.THI_0623PF11074mitochondrial; (mitochondrial)
426114.THI_2412(PF04143)ER
426114.THI_2413(PF04143)ER
426114.THI_3734(PF16036)ER
426114.THI_2844(PF04143)ER; (plastid)
426114.THI_0736(PF12483)ER
426114.THI_1931(PF10571)mitochondrial
426114.THI_2905(PF16036)ER
426114.THI_2337(PF11563)ER
426114.THI_3689PF11074mitochondrial; (mitochondrial)
426114.THI_2219(PF01695)(ER)
426114.THI_1306(PF01695)(ER)
426114.THI_0459(PF01695)(ER)
426114.THI_3123(PF05598)(plastid)
426114.THI_2657(PF03952) (PF00113)
426114.THI_2539(PF01695)(ER)
426114.THI_3381(PF04143)plastid
426114.THI_0525(PF03952) (PF00113)
426114.THI_3733(PF16036)(ER)
426114.THI_2130(PF03952) (PF00113)
426114.THI_0777(PF11563)
426114.THI_0956(PF01695)
426114.THI_1967PF05203
426114.THI_2005(PF05598)
426114.THI_2003(PF05598)
426114.THI_1376(PF01695)
426114.THI_2016(PF03050)
426114.THI_2549(PF01695)
426114.THI_1093(PF03050)
426114.THI_1316(PF03050)
426114.THI_2324(PF01695)
426114.THI_2366(PF01695)
426114.THI_1326(PF04143)
426114.THI_1435(PF01695)
426114.THI_0691(PF01695)
426114.THI_0871(PF05598)
426114.THI_1509(PF11563)
426114.THI_0470(PF16155)
426114.THI_3111(PF05598)
426114.THI_0065(PF05598)
426114.THI_1298(PF05598)
426114.THI_1297(PF01695)
426114.THI_0077(PF01695)
426114.THI_1709(PF03050)
426114.THI_2883(PF03050)
426114.THI_0626(PF03050)
426114.THI_2380(PF11563)
426114.THI_1270(PF13429)
426114.THI_1383(PF00342)
426114.THI_0380(PF13429)
426114.THI_0520(PF00342)
426114.THI_0521(PF00342)
426114.THI_3390(PF05598)
426114.THI_1467(PF05598)
426114.THI_2852(PF05598)
426114.THI_0722(PF03050)
426114.THI_0721(PF03050)
426114.THI_0506(PF01695)
426114.THI_0501(PF05598)
426114.THI_3068(PF01695)
426114.THI_3062(PF03050)
426114.THI_1804(PF05598)
426114.THI_2878(PF05598)
426114.THI_2346(PF01695)
426114.THI_3188(PF05598)
426114.THI_2027(PF01695)
426114.THI_2026(PF03050)
426114.THI_0981(PF05598)
426114.THI_2028(PF05598)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================