Metamenu

Effective results for Ruminococcus gnavus ATCC 29149 (eggnog40)

Summary

Number of putative secreted proteins: 120
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 120 proteins (2 high, 118 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411470.RUMGNA_01645(PF13127)ER
411470.RUMGNA_02277(PF05738)ER
411470.RUMGNA_01494(PF05738)ER
411470.RUMGNA_00218(PF00436)(mitochondrial)
411470.RUMGNA_03248(PF05738)ER
411470.RUMGNA_00532(PF01554)(ER)
411470.RUMGNA_01451(PF05738)ER
411470.RUMGNA_02765(PF01813)(mitochondrial)
411470.RUMGNA_03952(PF09820)mitochondrial
411470.RUMGNA_01955(PF06541)ER
411470.RUMGNA_02759(PF00137)ER
411470.RUMGNA_01398(PF00882)ER
411470.RUMGNA_00774(PF01554)ER
411470.RUMGNA_01413(PF00438) (PF02773) (PF02772)
411470.RUMGNA_03967(PF05738)ER
411470.RUMGNA_01182(PF06541)ER
411470.RUMGNA_02781(PF00438) (PF02773) (PF02772)
411470.RUMGNA_02880(PF00137)ER
411470.RUMGNA_01326(PF01554)(ER)
411470.RUMGNA_00811(PF06541)(mitochondrial)
411470.RUMGNA_02412(PF05738)ER
411470.RUMGNA_03681(PF13529)ER
411470.RUMGNA_00488(PF00438) (PF02773) (PF02772)
411470.RUMGNA_01783(PF00137)ER
411470.RUMGNA_00013(PF00625)(mitochondrial)
411470.RUMGNA_00495(PF05738)ER
411470.RUMGNA_03127(PF13529)ER
411470.RUMGNA_01819(PF09820)(plastid)
411470.RUMGNA_02758(PF01496)(mitochondrial)
411470.RUMGNA_01279(PF00436)(mitochondrial)
411470.RUMGNA_00730(PF03432)(mitochondrial)
411470.RUMGNA_02763(PF16886)(mitochondrial)
411470.RUMGNA_03941(PF01554)(ER)
411470.RUMGNA_03372(PF01554)(ER)
411470.RUMGNA_01427(PF01653) (PF03120)
411470.RUMGNA_01883(PF06541)(mitochondrial)
411470.RUMGNA_00165(PF01653) (PF03120)
411470.RUMGNA_02264(PF00436)(mitochondrial)
411470.RUMGNA_02883(PF16886)(mitochondrial)
411470.RUMGNA_00017(PF01653) (PF03120)
411470.RUMGNA_01642(PF01554)
411470.RUMGNA_00467(PF13551)
411470.RUMGNA_00207(PF08774)
411470.RUMGNA_01497(PF13551)
411470.RUMGNA_00610(PF09820)
411470.RUMGNA_02346(PF08774)
411470.RUMGNA_01240(PF01554)
411470.RUMGNA_03759(PF13551)
411470.RUMGNA_02298(PF01554)
411470.RUMGNA_02977(PF01554)
411470.RUMGNA_02804(PF00381)
411470.RUMGNA_01618(PF00381)
411470.RUMGNA_01133(PF03432)
411470.RUMGNA_01136(PF03432)
411470.RUMGNA_03649(PF01554)
411470.RUMGNA_03519PF16994
411470.RUMGNA_01850(PF01554)
411470.RUMGNA_02394(PF05704)
411470.RUMGNA_01454(PF13529)
411470.RUMGNA_02822(PF00625)
411470.RUMGNA_01193(PF13529)
411470.RUMGNA_02762(PF01990)
411470.RUMGNA_02760(PF01991)
411470.RUMGNA_02761(PF01992)
411470.RUMGNA_03535(PF00381)
411470.RUMGNA_03386(PF01554)
411470.RUMGNA_02019(PF00381)
411470.RUMGNA_01441(PF00436)
411470.RUMGNA_03390(PF09820)not used
411470.RUMGNA_03956(PF01554)
411470.RUMGNA_01366(PF00381)
411470.RUMGNA_00410(PF01554)
411470.RUMGNA_02708(PF01554)
411470.RUMGNA_00363(PF00381)
411470.RUMGNA_03030(PF09811)
411470.RUMGNA_01951(PF00381)
411470.RUMGNA_01425(PF13151)
411470.RUMGNA_02858(PF09820)
411470.RUMGNA_02857(PF09820)
411470.RUMGNA_02734(PF13597)
411470.RUMGNA_00357(PF06777)
411470.RUMGNA_00607(PF01554)
411470.RUMGNA_00605(PF01807)
411470.RUMGNA_03730(PF13151)
411470.RUMGNA_02043(PF00436)
411470.RUMGNA_02049(PF08774)
411470.RUMGNA_01181(PF01416)
411470.RUMGNA_00763(PF01807)
411470.RUMGNA_00909(PF03432)
411470.RUMGNA_03901(PF01807)
411470.RUMGNA_02057(PF00436)
411470.RUMGNA_02875(PF13551)
411470.RUMGNA_02878(PF01992)
411470.RUMGNA_02879(PF01496)
411470.RUMGNA_01353(PF01554)
411470.RUMGNA_01997(PF01554)
411470.RUMGNA_00334(PF01554)
411470.RUMGNA_00623(PF13597)
411470.RUMGNA_00801(PF01416)
411470.RUMGNA_00808(PF12646)
411470.RUMGNA_00932(PF00882)
411470.RUMGNA_03590(PF00436)
411470.RUMGNA_03049(PF01416)
411470.RUMGNA_02882(PF01991)
411470.RUMGNA_02881(PF01990)
411470.RUMGNA_02885(PF01813)
411470.RUMGNA_01327(PF01554)
411470.RUMGNA_00747(PF01807)
411470.RUMGNA_02278(PF05738)
411470.RUMGNA_03850(PF01554)
411470.RUMGNA_02410PF07959
411470.RUMGNA_00796(PF00381)
411470.RUMGNA_03849(PF00625)
411470.RUMGNA_02333(PF12224)
411470.RUMGNA_00011(PF13597)
411470.RUMGNA_00016(PF00381)
411470.RUMGNA_00497(PF12224)
411470.RUMGNA_00498(PF12224)
411470.RUMGNA_03308(PF07247)
411470.RUMGNA_02257(PF03432)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================