Effective results for Nocardioidaceae bacterium Broad-1 (eggnog40)

Summary

Number of putative secreted proteins: 68
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 68 proteins (4 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
408672.NBCG_02308				(PF01186)	mitochondrial; ER
408672.NBCG_00626				(PF13564)	ER
408672.NBCG_02995				(PF02012)	ER
408672.NBCG_03622				(PF16387)	ER
408672.NBCG_04517				(PF13564)	ER
408672.NBCG_03968				(PF13564)	ER
408672.NBCG_03397				(PF13564)	ER
408672.NBCG_02527				(PF08326)	mitochondrial; (mitochondrial)
408672.NBCG_05311				(PF13539)	ER
408672.NBCG_03060				(PF02366)	ER
408672.NBCG_04199				(PF13564)	ER
408672.NBCG_04404				(PF02128)	(ER)
408672.NBCG_00638				(PF13564)	ER
408672.NBCG_02989				(PF13539)	(mitochondrial)
408672.NBCG_00675				(PF13564)	ER
408672.NBCG_02438				(PF02012)	ER
408672.NBCG_01298				(PF02128)	(ER); (mitochondrial)
408672.NBCG_00715				(PF13539)	ER
408672.NBCG_04061				(PF13564)	ER
408672.NBCG_03935				(PF13653)	ER
408672.NBCG_00771				(PF13564)	ER
408672.NBCG_01628				(PF01409) (PF02912)
408672.NBCG_01627				(PF03484)	(ER)
408672.NBCG_03470				(PF01642) (PF03308)
408672.NBCG_01810				(PF01642) (PF03308)
408672.NBCG_02678				(PF01409) (PF02912)
408672.NBCG_01843				(PF01642) (PF03308)
408672.NBCG_03810				(PF01642) (PF03308)
408672.NBCG_02176				(PF01016)
408672.NBCG_02812				(PF02656)
408672.NBCG_02362				(PF02656)
408672.NBCG_01974				(PF03015)
408672.NBCG_05195				(PF11838)
408672.NBCG_04312				(PF09055)
408672.NBCG_02409				(PF04120)
408672.NBCG_01817				(PF07287)
408672.NBCG_05524				(PF01642)
408672.NBCG_03989				(PF01016)	not used
408672.NBCG_04393				(PF03308)
408672.NBCG_02705				(PF11838)
408672.NBCG_02662				(PF02224)
408672.NBCG_02721				(PF02224)
408672.NBCG_01157				(PF02656)
408672.NBCG_01158				(PF02656)
408672.NBCG_04033				PF13455
408672.NBCG_02786				(PF11838)
408672.NBCG_03065				(PF02366)
408672.NBCG_00860				(PF07287)
408672.NBCG_01657				(PF05277)
408672.NBCG_00429				(PF03059)
408672.NBCG_00210				(PF05704)
408672.NBCG_03743				(PF11838)
408672.NBCG_00989				PF08213	not used
408672.NBCG_00982				(PF04120)
408672.NBCG_00981				(PF04120)
408672.NBCG_05519				(PF03308)
408672.NBCG_04707				(PF09055)
408672.NBCG_02679				(PF03484)
408672.NBCG_04367				(PF01642)
408672.NBCG_02813				(PF02656)
408672.NBCG_02056				PF16994
408672.NBCG_05525				(PF01642)
408672.NBCG_05523				(PF01642)
408672.NBCG_01765				(PF14330)
408672.NBCG_01766				(PF07287)
408672.NBCG_04683				(PF02366)
408672.NBCG_02070				(PF02366)
408672.NBCG_05694				PF13455

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================