Effective results for Petrotoga mobilis SJ95 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 37 proteins (1 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
403833.Pmob_1431				(PF16561)	ER
403833.Pmob_1135				(PF16561)	ER
403833.Pmob_0454				(PF13394)	mitochondrial
403833.Pmob_1742				(PF03266)	(mitochondrial)
403833.Pmob_0183				(PF13353)	(plastid)
403833.Pmob_0241				(PF07837) (PF02971)
403833.Pmob_1520				(PF13394)	(mitochondrial)
403833.Pmob_0979				(PF13353)	(ER)
403833.Pmob_1949				(PF13353)
403833.Pmob_0668				(PF13353)
403833.Pmob_0669				(PF13353)
403833.Pmob_1031				(PF04961)
403833.Pmob_0678				(PF13353)
403833.Pmob_0649				PF01876
403833.Pmob_1905				(PF13394)
403833.Pmob_1058				(PF13353)
403833.Pmob_0373				(PF13394)
403833.Pmob_1460				(PF13353)
403833.Pmob_1047				(PF13353)
403833.Pmob_1867				(PF00862)
403833.Pmob_0123				(PF02350)
403833.Pmob_0933				(PF02350)
403833.Pmob_0686				(PF13353)
403833.Pmob_0687				(PF13353)
403833.Pmob_1288				(PF02350)
403833.Pmob_1340				(PF13353)
403833.Pmob_1519				(PF13394)
403833.Pmob_1565				(PF13353)
403833.Pmob_1294				(PF02350)
403833.Pmob_1561				(PF13353)
403833.Pmob_1367				(PF07837)
403833.Pmob_0169				(PF13394)
403833.Pmob_1570				(PF13394)
403833.Pmob_1284				(PF02350)
403833.Pmob_0398				(PF04961)
403833.Pmob_1144				(PF12646)
403833.Pmob_0146				(PF09419)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================