Effective results for Sphingomonas wittichii RW1 (eggnog40)

Summary

Number of putative secreted proteins: 524
- Predicted by T4SEpre: 55
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 482 proteins (107 high, 375 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
392499.Swit_0899+(PF07715) (PF00593)ER
392499.Swit_3395+(PF07715) (PF00593)ER
392499.Swit_4231+(PF07715) (PF00593)ER
392499.Swit_2477(PF07715) (PF00593)ER
392499.Swit_3263(PF07715) (PF00593)ER
392499.Swit_1776(PF07715) (PF00593)(ER)
392499.Swit_1573(PF07715) (PF00593)ER
392499.Swit_0730(PF07715) (PF00593)mitochondrial
392499.Swit_3336(PF07715) (PF00593)ER
392499.Swit_2060(PF07715) (PF00593)ER
392499.Swit_2240(PF07715) (PF00593)ER
392499.Swit_4145(PF07715) (PF00593)ER; (ER)
392499.Swit_0505(PF07715) (PF00593)(mitochondrial); (ER)
392499.Swit_1747(PF07715) (PF00593)(ER)
392499.Swit_4151(PF07715) (PF00593)ER
392499.Swit_0725(PF07715) (PF00593)ER; (ER)
392499.Swit_3857(PF07715) (PF00593)mitochondrial; ER
392499.Swit_2075(PF07715) (PF00593)ER
392499.Swit_0714(PF07715) (PF00593)ER
392499.Swit_0538PF00355 PF00848mitochondrial
392499.Swit_0532(PF07715) (PF00593)ER
392499.Swit_0535(PF07715) (PF00593)ER
392499.Swit_1910(PF07715) (PF00593)(mitochondrial)
392499.Swit_3281(PF07715) (PF00593)ER
392499.Swit_2621(PF07715) (PF00593)ER
392499.Swit_1722(PF07715) (PF00593)ER
392499.Swit_4179(PF07715) (PF00593)mitochondrial; (mitochondrial)
392499.Swit_4173(PF07715) (PF00593)ER
392499.Swit_1436(PF07715) (PF00593)ER
392499.Swit_4350(PF07715) (PF00593)(mitochondrial)
392499.Swit_1656(PF07715) (PF00593)ER
392499.Swit_0706(PF07715) (PF00593)ER
392499.Swit_4282(PF07715) (PF00593)ER
392499.Swit_0709(PF07715) (PF00593)ER
392499.Swit_0673(PF07715) (PF00593)mitochondrial
392499.Swit_3653(PF07715) (PF00593)ER
392499.Swit_2522(PF07715) (PF00593)ER
392499.Swit_3861(PF07715) (PF00593)ER
392499.Swit_4348(PF07715) (PF00593)(ER); ER
392499.Swit_4618(PF07715) (PF00593)ER; (mitochondrial)
392499.Swit_4611(PF07715) (PF00593)ER
392499.Swit_1702(PF07715) (PF00593)(mitochondrial); mitochondrial
392499.Swit_1484(PF07715) (PF00593)ER
392499.Swit_2517(PF07715) (PF00593)ER
392499.Swit_3044(PF07715) (PF00593)ER
392499.Swit_0478(PF07715) (PF00593)ER
392499.Swit_4625(PF07715) (PF00593)ER
392499.Swit_4330+(PF07715) (PF00593)(ER)
392499.Swit_4332(PF07715) (PF00593)ER
392499.Swit_4025(PF07715) (PF00593)(ER)
392499.Swit_1673(PF07715) (PF00593)ER
392499.Swit_1671(PF07715) (PF00593)(mitochondrial); mitochondrial
392499.Swit_3256(PF07715) (PF00593)ER; (ER)
392499.Swit_4804(PF07715) (PF00593)ER
392499.Swit_3103(PF07715) (PF00593)mitochondrial
392499.Swit_3032(PF07715) (PF00593)ER
392499.Swit_2291(PF07715) (PF00593)(ER)
392499.Swit_2500(PF07715) (PF00593)(ER)
392499.Swit_2507(PF07715) (PF00593)ER
392499.Swit_1081(PF07715) (PF00593)mitochondrial; (mitochondrial)
392499.Swit_1063(PF07715) (PF00593)ER; (mitochondrial)
392499.Swit_1066(PF07715) (PF00593)ER
392499.Swit_4253(PF07715) (PF00593)ER
392499.Swit_4257(PF07715) (PF00593)ER; (ER)
392499.Swit_3241(PF07715) (PF00593)(ER)
392499.Swit_0999(PF07715) (PF00593)ER
392499.Swit_3027(PF07715) (PF00593)ER
392499.Swit_3758(PF07715) (PF00593)ER
392499.Swit_3750(PF07715) (PF00593)mitochondrial
392499.Swit_1583(PF07715) (PF00593)mitochondrial
392499.Swit_1502(PF07715) (PF00593)ER
392499.Swit_4318(PF07715) (PF00593)mitochondrial
392499.Swit_0838(PF07715) (PF00593)ER; plastid
392499.Swit_3560(PF07715) (PF00593)ER
392499.Swit_3561(PF07715) (PF00593)ER
392499.Swit_3766(PF07715) (PF00593)(ER)
392499.Swit_1191(PF07715) (PF00593)mitochondrial
392499.Swit_1868(PF07715) (PF00593)(mitochondrial)
392499.Swit_4129(PF07715) (PF00593)(ER)
392499.Swit_4125(PF07715) (PF00593)ER
392499.Swit_1688(PF07715) (PF00593)ER
392499.Swit_4781(PF07715) (PF00593)(mitochondrial)
392499.Swit_3918(PF07715) (PF00593)ER
392499.Swit_4274(PF07715) (PF00593)ER; (ER)
392499.Swit_0931(PF07715) (PF00593)ER
392499.Swit_4302(PF07715) (PF00593)ER
392499.Swit_0330(PF07715) (PF00593)ER
392499.Swit_2885(PF07715) (PF00593)ER
392499.Swit_2950(PF07715) (PF00593)ER
392499.Swit_1859(PF07715) (PF00593)ER
392499.Swit_4206(PF07715) (PF00593)ER
392499.Swit_0812(PF07715) (PF00593)ER
392499.Swit_0818(PF07715) (PF00593)ER
392499.Swit_0924(PF07715) (PF00593)ER
392499.Swit_2301(PF07715) (PF00593)ER
392499.Swit_2300(PF07715) (PF00593)ER
392499.Swit_1443(PF07715) (PF00593)ER
392499.Swit_1022(PF07715) (PF00593)ER
392499.Swit_1534(PF07715) (PF00593)(ER)
392499.Swit_1539(PF07715) (PF00593)(ER)
392499.Swit_4214(PF07715) (PF00593)mitochondrial
392499.Swit_4696(PF07715) (PF00593)ER
392499.Swit_4852(PF07715) (PF00593)ER
392499.Swit_4197(PF07715) (PF00593)ER; (ER)
392499.Swit_0540(PF07715) (PF00593)ER
392499.Swit_1169(PF07715) (PF00593)ER; (ER)
392499.Swit_0302(PF07715) (PF00593)ER
392499.Swit_3091(PF07715) (PF00593)ER
392499.Swit_1794(PF07715) (PF00593)ER
392499.Swit_0687(PF07715) (PF00593)ER
392499.Swit_3080(PF07715) (PF00593)ER
392499.Swit_2041(PF07715) (PF00593)(ER)
392499.Swit_2264(PF07715) (PF00593)ER
392499.Swit_4738(PF07715) (PF00593)(ER); (mitochondrial)
392499.Swit_4085(PF07715) (PF00593)ER
392499.Swit_4088(PF07715) (PF00593)ER
392499.Swit_3189(PF07715) (PF00593)ER
392499.Swit_1775(PF01979)mitochondrial; (mitochondrial)
392499.Swit_1774(PF01979)ER
392499.Swit_0762(PF00676) (PF02779) (PF02780)
392499.Swit_4227(PF01557)mitochondrial
392499.Swit_1116(PF07715)ER; (ER)
392499.Swit_3331PF07110mitochondrial
392499.Swit_3422(PF07715)ER
392499.Swit_2115(PF01979)ER
392499.Swit_4429+ER
392499.Swit_1900(PF01011)ER
392499.Swit_1901(PF07715)ER; (ER)
392499.Swit_4373+ER
392499.Swit_3074(PF02538)(mitochondrial); (plastid)
392499.Swit_2255(PF13669)(ER)
392499.Swit_0715(PF07969)ER
392499.Swit_0533(PF01979)ER
392499.Swit_2009PF07110mitochondrial
392499.Swit_2396(PF07969)ER
392499.Swit_0419+ER
392499.Swit_4358(PF07715)ER
392499.Swit_0890PF00355 PF00848(mitochondrial)
392499.Swit_3654(PF04909)mitochondrial
392499.Swit_0468+(ER); ER
392499.Swit_1939+ER
392499.Swit_4619(PF14534)ER
392499.Swit_3480+mitochondrial
392499.Swit_2355+(ER)
392499.Swit_1252(PF13469)ER
392499.Swit_0079(PF01979)ER
392499.Swit_1076(PF00450)ER
392499.Swit_1676(PF07715)(ER)
392499.Swit_0277(PF07715)ER
392499.Swit_0035+ER
392499.Swit_2295(PF01557)(ER)
392499.Swit_2505(PF16123)(ER)
392499.Swit_1082(PF00450)ER
392499.Swit_1663(PF16123)ER; (ER)
392499.Swit_0913(PF01979)ER
392499.Swit_3243(PF07969)mitochondrial
392499.Swit_3242(PF07969)(mitochondrial)
392499.Swit_3245(PF07969)ER
392499.Swit_3246(PF07969)ER
392499.Swit_2574+ER
392499.Swit_2575(PF07715)ER
392499.Swit_1985(PF07715)ER
392499.Swit_4269PF00355(ER)
392499.Swit_4319(PF00450)mitochondrial
392499.Swit_3581(PF14534)ER
392499.Swit_3767(PF07969)ER
392499.Swit_2417(PF00450)ER
392499.Swit_2416(PF01979)ER
392499.Swit_2414(PF00450)ER
392499.Swit_1862PF07110mitochondrial
392499.Swit_1867(PF01979)mitochondrial
392499.Swit_4309(PF01557)(ER)
392499.Swit_4873+mitochondrial
392499.Swit_3225(PF07715) (PF00593)(ER)
392499.Swit_2083+(PF01968) (PF05378)
392499.Swit_3773(PF00450)ER
392499.Swit_2313(PF04909)mitochondrial
392499.Swit_2227(PF01011)mitochondrial
392499.Swit_2420(PF07715) (PF00593)(ER)
392499.Swit_1218PF10345ER
392499.Swit_4669+(mitochondrial); plastid
392499.Swit_3144+(PF07715) (PF00593)
392499.Swit_1273+ER
392499.Swit_4304(PF01979)ER
392499.Swit_1020PF07110(mitochondrial); (plastid)
392499.Swit_1234+ER
392499.Swit_4008+(mitochondrial)
392499.Swit_1542PF00355(mitochondrial)
392499.Swit_3458+ER
392499.Swit_2922(PF01979)(mitochondrial)
392499.Swit_1224(PF00676)(mitochondrial)
392499.Swit_1821(PF07715) (PF00593)(mitochondrial)
392499.Swit_1820(PF07969)ER
392499.Swit_1001(PF01011)(mitochondrial)
392499.Swit_0681(PF01979)ER
392499.Swit_1175(PF14534)(mitochondrial); plastid
392499.Swit_4521+ER
392499.Swit_3884(PF00676) (PF02780) (PF02779)
392499.Swit_2996(PF06455)ER
392499.Swit_3406(PF07715)ER
392499.Swit_3314(PF07715)(ER)
392499.Swit_3312(PF07715) (PF00593)(mitochondrial)
392499.Swit_0080(PF07969)ER
392499.Swit_1810(PF07715) (PF00593)(mitochondrial)
392499.Swit_0693(PF01011)ER
392499.Swit_0185+(mitochondrial); plastid
392499.Swit_0981(PF07715) (PF00593)(ER)
392499.Swit_4343(PF01968) (PF05378) (PF02538)
392499.Swit_3327PF07110(mitochondrial)
392499.Swit_2059(PF07969)ER
392499.Swit_2121(PF00593)ER
392499.Swit_2271PF00355 PF00848
392499.Swit_2471(PF07715) (PF00593)
392499.Swit_4226(PF01968) (PF05378)
392499.Swit_3048(PF07715) (PF00593)
392499.Swit_0840(PF02779) (PF02780)
392499.Swit_1454+(ER)
392499.Swit_1298(PF00676) (PF02779)
392499.Swit_4143(PF01968) (PF05378)
392499.Swit_4140(PF07715) (PF00593)
392499.Swit_0347(PF02779) (PF02780)
392499.Swit_3075(PF01968) (PF05378)
392499.Swit_2253PF00355 PF00848
392499.Swit_2601(PF02780) (PF02779)
392499.Swit_1758PF00355 PF00848
392499.Swit_1624+(plastid)
392499.Swit_0667(PF02779) (PF02780)
392499.Swit_1727+(plastid)
392499.Swit_4174PF00355 PF00848
392499.Swit_4280PF00355 PF00848
392499.Swit_0896PF00355 PF00848
392499.Swit_2634PF00355 PF00848
392499.Swit_3863(PF09298) (PF01557)
392499.Swit_3649(PF01968) (PF05378)
392499.Swit_2029PF13577(ER)
392499.Swit_1559PF00355 PF00848
392499.Swit_0475(PF01968) (PF05378)
392499.Swit_4621PF00355 PF00848
392499.Swit_1077(PF07715) (PF00593)
392499.Swit_2035(PF01968) (PF05378)
392499.Swit_2033(PF07715) (PF00593)
392499.Swit_1719(PF01968) (PF05378)
392499.Swit_0914(PF07715) (PF00593)
392499.Swit_3937+(plastid)
392499.Swit_1874PF00355 PF00848
392499.Swit_1988PF00355 PF00848
392499.Swit_1056(PF02779) (PF02780)
392499.Swit_1052(PF02423)(ER)
392499.Swit_4262(PF02423)(ER)
392499.Swit_3580(PF07715) (PF00593)
392499.Swit_1461(PF02779) (PF02780)
392499.Swit_1685(PF09298) (PF01557)
392499.Swit_0932PF00355 PF00848
392499.Swit_0336PF00355 PF00848
392499.Swit_2226(PF07715) (PF00593)
392499.Swit_0765(PF07715) (PF00593)
392499.Swit_1039(PF02780) (PF02779)
392499.Swit_4150PF00355 PF00848
392499.Swit_0324PF00355 PF00848
392499.Swit_0921(PF07715) (PF00593)
392499.Swit_2892+(PF13669)
392499.Swit_2309(PF14534)(mitochondrial)
392499.Swit_0588+(plastid)
392499.Swit_1531PF00355 PF00848
392499.Swit_3796+(ER)
392499.Swit_0781(PF02780) (PF02779)
392499.Swit_1547(PF01557)(plastid)
392499.Swit_3410+PF00355
392499.Swit_2144(PF02779) (PF02780)
392499.Swit_1225(PF02780) (PF02779)
392499.Swit_0964(PF07715) (PF00593)
392499.Swit_4188PF00355 PF00848
392499.Swit_1558(PF09298) (PF01557)
392499.Swit_0680(PF07715) (PF00593)
392499.Swit_0973PF00355 PF00848
392499.Swit_2045(PF07715) (PF00593)
392499.Swit_2269(PF02780) (PF02779)
392499.Swit_2260PF00355 PF00848
392499.Swit_2261PF00355 PF00848
392499.Swit_2262(PF13669)(ER)
392499.Swit_2466+(mitochondrial)
392499.Swit_4196(PF01968) (PF05378)
392499.Swit_1961(PF01011)(ER)
392499.Swit_4083(PF01968) (PF05378)
392499.Swit_1105(PF01979)(ER)
392499.Swit_1617(PF04909)(ER)
392499.Swit_0966PF00355 PF00848
392499.Swit_0744PF00355 PF00848
392499.Swit_0962PF00355 PF00848
392499.Swit_0989(PF07715) (PF00593)
392499.Swit_3056PF00355 PF00848
392499.Swit_2270(PF00676)
392499.Swit_2872(PF02882)
392499.Swit_2472(PF14534)
392499.Swit_1590(PF02423)
392499.Swit_1596(PF00593)
392499.Swit_4225(PF02538)
392499.Swit_1606+
392499.Swit_3330PF13577
392499.Swit_2069(PF04909)
392499.Swit_2064(PF02882)
392499.Swit_2806+
392499.Swit_0504PF00355
392499.Swit_0501(PF14534)
392499.Swit_1749(PF04909)
392499.Swit_4152(PF14534)
392499.Swit_1132+
392499.Swit_4387PF13577
392499.Swit_1632(PF05199)
392499.Swit_1631(PF07715)
392499.Swit_3293PF13577
392499.Swit_2077(PF04909)
392499.Swit_2251PF00355
392499.Swit_0534(PF13469)
392499.Swit_1753(PF04909)
392499.Swit_4144(PF02538)
392499.Swit_3369(PF07969)
392499.Swit_3285PF13577
392499.Swit_0668(PF00676)
392499.Swit_3060(PF01557)
392499.Swit_3063(PF04909)
392499.Swit_3062PF00355
392499.Swit_2008(PF13669)
392499.Swit_2390(PF05199)
392499.Swit_1802+
392499.Swit_1431PF13577
392499.Swit_0386(PF04909)
392499.Swit_1650(PF01557)
392499.Swit_1978PF13577
392499.Swit_3278PF13577
392499.Swit_3276(PF13669)
392499.Swit_3277(PF05019)
392499.Swit_0893PF00355
392499.Swit_3016(PF14534)
392499.Swit_0356(PF07969)
392499.Swit_0355PF13577
392499.Swit_2013(PF07969)
392499.Swit_2521PF00355
392499.Swit_1737PF13577
392499.Swit_1735(PF07969)
392499.Swit_1739(PF05199)
392499.Swit_1738(PF07969)
392499.Swit_1396PF00355
392499.Swit_4297PF00355
392499.Swit_0287(PF13469)
392499.Swit_0288(PF13669)
392499.Swit_3266PF00355
392499.Swit_3264PF00355
392499.Swit_4588(PF13759)
392499.Swit_0603(PF01979)
392499.Swit_3396PF00355
392499.Swit_3645(PF04909)
392499.Swit_3644(PF13669)
392499.Swit_3642(PF13469)
392499.Swit_2737(PF01979)
392499.Swit_3648(PF02538)
392499.Swit_2023(PF07969)
392499.Swit_2024(PF01011)
392499.Swit_4186PF13577
392499.Swit_2286(PF01557)
392499.Swit_2285PF00355
392499.Swit_2280PF13577
392499.Swit_0476(PF02538)
392499.Swit_0474+
392499.Swit_1894(PF05199)
392499.Swit_1411(PF14534)
392499.Swit_0275(PF01979)
392499.Swit_0276(PF13669)
392499.Swit_2111(PF01557)
392499.Swit_0292PF13577
392499.Swit_4242(PF05199)
392499.Swit_4247(PF01557)
392499.Swit_2034PF00355
392499.Swit_2036(PF02538)
392499.Swit_2296PF13577
392499.Swit_2502PF00355
392499.Swit_1718(PF02538)
392499.Swit_1715(PF02423)
392499.Swit_1062(PF13759)
392499.Swit_1067PF00355
392499.Swit_1064(PF05199)
392499.Swit_4030+
392499.Swit_0911(PF01557)
392499.Swit_0912(PF01557)
392499.Swit_4633(PF01979)
392499.Swit_4634(PF01979)
392499.Swit_4810(PF05199)
392499.Swit_0820(PF01557)
392499.Swit_3024PF00355
392499.Swit_3022(PF01557)
392499.Swit_3759(PF07969)
392499.Swit_2378(PF05199)
392499.Swit_3082+
392499.Swit_4134(PF01557)
392499.Swit_1984PF13577
392499.Swit_1986(PF16123)
392499.Swit_1987PF00355
392499.Swit_0817(PF01979)
392499.Swit_1057(PF00676)
392499.Swit_1059(PF12973)
392499.Swit_4261(PF01557)
392499.Swit_0907(PF00593)
392499.Swit_0905(PF07715)
392499.Swit_4313(PF01557)
392499.Swit_0839(PF00676)
392499.Swit_0837PF00355
392499.Swit_2984+
392499.Swit_4861PF00355
392499.Swit_3348(PF05019)
392499.Swit_3345(PF07969)
392499.Swit_3763(PF02423)
392499.Swit_3768PF13577
392499.Swit_0313(PF04909)
392499.Swit_2415(PF02423)
392499.Swit_0669+
392499.Swit_4128PF13577
392499.Swit_1991+
392499.Swit_1040(PF00676)
392499.Swit_1683(PF04909)
392499.Swit_1681(PF01557)
392499.Swit_1687PF00355
392499.Swit_1686PF00355
392499.Swit_4278PF00355
392499.Swit_4271(PF01557)
392499.Swit_4273PF00355
392499.Swit_4277(PF05199)
392499.Swit_0339PF13577
392499.Swit_4308(PF01557)
392499.Swit_0672PF00355
392499.Swit_0675PF13577
392499.Swit_3359PF13577
392499.Swit_2881(PF01979)
392499.Swit_2084(PF02538)
392499.Swit_2087(PF07969)
392499.Swit_2310PF00355
392499.Swit_2798(PF16123)
392499.Swit_2224(PF01979)
392499.Swit_1327+
392499.Swit_4208(PF01979)
392499.Swit_0811(PF12973)
392499.Swit_3368PF13577
392499.Swit_4518(PF05199)
392499.Swit_0346(PF00676)
392499.Swit_0768(PF12973)
392499.Swit_1840+
392499.Swit_2091(PF07969)
392499.Swit_2308(PF04909)
392499.Swit_2302(PF01557)
392499.Swit_3142(PF13759)
392499.Swit_3141(PF13469)
392499.Swit_2239PF00355
392499.Swit_0728(PF05199)
392499.Swit_1639(PF01557)
392499.Swit_3119(PF00450)
392499.Swit_3286(PF13469)
392499.Swit_1025PF13577
392499.Swit_1537(PF01557)
392499.Swit_1717(PF01979)
392499.Swit_0312(PF07969)
392499.Swit_4670(PF05199)
392499.Swit_4506+
392499.Swit_0770(PF13669)
392499.Swit_0782(PF00676)
392499.Swit_4194(PF01979)
392499.Swit_1946PF13577
392499.Swit_1786PF13577
392499.Swit_1785(PF01979)
392499.Swit_1788(PF04909)
392499.Swit_1544PF07110
392499.Swit_1541PF00355
392499.Swit_1543PF00355
392499.Swit_1549PF00355
392499.Swit_3940+
392499.Swit_1166(PF02779)
392499.Swit_0307(PF13469)
392499.Swit_0306(PF13669)
392499.Swit_0940(PF02882)
392499.Swit_3419(PF00593)
392499.Swit_3413PF00355
392499.Swit_3416PF00355
392499.Swit_3307PF00355
392499.Swit_3301(PF13469)
392499.Swit_4067+
392499.Swit_3095PF13577
392499.Swit_3524(PF04909)
392499.Swit_3520(PF01557)
392499.Swit_3521(PF01557)
392499.Swit_2145(PF00676)
392499.Swit_1310+
392499.Swit_0742(PF01557)
392499.Swit_0963PF13577
392499.Swit_1829PF00355
392499.Swit_1556(PF14534)
392499.Swit_1552PF00355
392499.Swit_1550PF00355
392499.Swit_0373(PF13469)
392499.Swit_0379(PF05199)
392499.Swit_4237(PF12973)
392499.Swit_3409PF00355
392499.Swit_3084(PF01557)
392499.Swit_3083(PF02423)
392499.Swit_2044(PF05199)
392499.Swit_0135+
392499.Swit_2460+
392499.Swit_1969(PF04909)
392499.Swit_1966(PF01979)
392499.Swit_1960(PF04909)
392499.Swit_1769PF13577
392499.Swit_1765(PF04909)
392499.Swit_1767(PF04909)
392499.Swit_1566(PF02423)
392499.Swit_1582(PF05199)
392499.Swit_4081(PF01979)
392499.Swit_0366(PF05199)
392499.Swit_0969PF00355
392499.Swit_0968PF13577
392499.Swit_0745PF13577
392499.Swit_0988(PF13816)
392499.Swit_3329PF13577
392499.Swit_3322PF13577
392499.Swit_3326PF13577
392499.Swit_3325PF07110
392499.Swit_3057PF13577
392499.Swit_2053PF00355

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================