Effective results for Rickettsia bellii OSU 85-389 (eggnog40)

Summary

Number of putative secreted proteins: 161
- Predicted by T4SEpre: 116
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 76 proteins (33 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
391896.A1I_04990			+		ER
391896.A1I_07530			+		ER
391896.A1I_03425			+		mitochondrial
391896.A1I_06365			+		ER
391896.A1I_04885			+		ER
391896.A1I_00235			+		ER
391896.A1I_03670			+	(PF12796) (PF13637)
391896.A1I_03350			+		(mitochondrial)
391896.A1I_00400			+		ER
391896.A1I_05845				(PF13173)	mitochondrial; (mitochondrial)
391896.A1I_05930			+		ER
391896.A1I_01430			+		ER
391896.A1I_00670			+		ER
391896.A1I_06455			+		ER
391896.A1I_04590			+		ER
391896.A1I_06190			+		(mitochondrial)
391896.A1I_02505			+		ER
391896.A1I_00135			+		ER
391896.A1I_07205				PF03219	mitochondrial; (mitochondrial)
391896.A1I_07045			+		mitochondrial
391896.A1I_02960			+		ER
391896.A1I_03760			+		ER
391896.A1I_00350			+		ER
391896.A1I_00495				PF02371	(ER)
391896.A1I_06210			+	(PF12796) (PF13637)
391896.A1I_06640				(PF13637)	ER
391896.A1I_07275			+		ER
391896.A1I_06575			+	(PF00023) (PF12796)
391896.A1I_03895				(PF13173)	(mitochondrial)
391896.A1I_07080				(PF03959)	ER
391896.A1I_07330			+		(mitochondrial)
391896.A1I_02250				(PF00023) (PF13637)
391896.A1I_00405				PF02326	(ER)
391896.A1I_07385			+	(PF13516)
391896.A1I_06710			+		(ER)
391896.A1I_06035				(PF12796) (PF13637)
391896.A1I_07780			+		(mitochondrial)
391896.A1I_04060				(PF12796) (PF13637)
391896.A1I_01005			+		(mitochondrial)
391896.A1I_05485			+
391896.A1I_02590			+
391896.A1I_01100			+
391896.A1I_00250			+
391896.A1I_07405				(PF13173)
391896.A1I_02695			+
391896.A1I_05290			+
391896.A1I_04100				(PF13516)
391896.A1I_04455				(PF12796)
391896.A1I_01115				PF02371
391896.A1I_04230			+
391896.A1I_04980			+
391896.A1I_06435				PF02371
391896.A1I_06810				PF02371
391896.A1I_07615			+
391896.A1I_06740				(PF13173)
391896.A1I_03510			+
391896.A1I_05460				(PF09825)
391896.A1I_05860			+
391896.A1I_03600				PF02371
391896.A1I_02640			+
391896.A1I_05040			+
391896.A1I_07210			+
391896.A1I_06770				PF02371
391896.A1I_02815			+
391896.A1I_06480			+
391896.A1I_05920				(PF14328)
391896.A1I_05635			+
391896.A1I_03705				PF03219
391896.A1I_05705				(PF13516)
391896.A1I_06075				PF02371
391896.A1I_04090				PF02371
391896.A1I_03170				(PF00023)
391896.A1I_06380				PF02371
391896.A1I_06495			+
391896.A1I_02825				(PF12796)
391896.A1I_07370			+
391896.A1I_06200				(PF12796)
391896.A1I_06535				PF02371
391896.A1I_03380				(PF13328)
391896.A1I_07815			+
391896.A1I_05160				(PF13328)
391896.A1I_05360			+
391896.A1I_04700				PF03219
391896.A1I_01640			+
391896.A1I_07140				(PF12796)
391896.A1I_03860				PF02371
391896.A1I_04965				PF03219
391896.A1I_03115			+
391896.A1I_04600			+
391896.A1I_04605			+
391896.A1I_04510				PF02371
391896.A1I_03105			+
391896.A1I_02725			+
391896.A1I_05415				PF02371
391896.A1I_02345				PF02371
391896.A1I_07905			+
391896.A1I_06135			+
391896.A1I_00445			+
391896.A1I_00910				PF02371
391896.A1I_02995			+
391896.A1I_06475				(PF13173)
391896.A1I_02750				PF02371
391896.A1I_02375				(PF12796)
391896.A1I_05995				(PF13637)
391896.A1I_00580			+
391896.A1I_04115			+
391896.A1I_04330			+
391896.A1I_07130				(PF12796)
391896.A1I_00120				PF02371
391896.A1I_03585			+
391896.A1I_02185				(PF13328)
391896.A1I_03160				(PF13328)
391896.A1I_02560				PF01369
391896.A1I_02415				(PF13516)
391896.A1I_04020			+
391896.A1I_05035			+
391896.A1I_06145				PF02371
391896.A1I_07105				PF02371
391896.A1I_01995				PF02371
391896.A1I_04250				(PF14441)
391896.A1I_04255				(PF13173)
391896.A1I_00455			+
391896.A1I_03225				(PF13328)
391896.A1I_03220			+
391896.A1I_07690			+
391896.A1I_07675			+
391896.A1I_00805			+
391896.A1I_07075			+
391896.A1I_06555			+
391896.A1I_02225				(PF13516)
391896.A1I_01140				(PF12796)
391896.A1I_03360				(PF00023)
391896.A1I_07065				(PF13173)
391896.A1I_06645				PF02371
391896.A1I_03145				(PF13328)
391896.A1I_02940			+
391896.A1I_05525				(PF13516)
391896.A1I_05655				(PF13328)
391896.A1I_05305				PF02371
391896.A1I_01205			+
391896.A1I_01200				PF02371
391896.A1I_00775				PF03219
391896.A1I_06655			+
391896.A1I_06325			+
391896.A1I_05820			+
391896.A1I_05225			+
391896.A1I_05310			+
391896.A1I_00200				PF02371
391896.A1I_01230				PF02371
391896.A1I_01945				(PF13516)
391896.A1I_01165				(PF12796)
391896.A1I_04200			+
391896.A1I_00940				PF02371
391896.A1I_00300			+
391896.A1I_02865			+
391896.A1I_06225			+
391896.A1I_07795			+
391896.A1I_02925			+
391896.A1I_01170			+
391896.A1I_00575			+
391896.A1I_04500			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.6 (16/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================