Effective results for Algoriphagus machipongonensis (eggnog40)

Summary

Number of putative secreted proteins: 237
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 45 eukaryotic-like domains, contained in 237 proteins (32 high, 205 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
388413.ALPR1_00300(PF02687) (PF12704)ER
388413.ALPR1_11375(PF02687) (PF12704)mitochondrial
388413.ALPR1_18703(PF02687) (PF12704)(ER)
388413.ALPR1_06830(PF13517) (PF07593)ER
388413.ALPR1_19758(PF13517) (PF07593)ER
388413.ALPR1_07860(PF02687) (PF12704)(ER)
388413.ALPR1_13455(PF02687) (PF12704)mitochondrial
388413.ALPR1_21168(PF02687) (PF12704)mitochondrial
388413.ALPR1_21169(PF02687) (PF12704)mitochondrial
388413.ALPR1_19748(PF13517) (PF07593)ER
388413.ALPR1_08683(PF02687) (PF12704)mitochondrial
388413.ALPR1_08433(PF02687) (PF12704)mitochondrial
388413.ALPR1_17883(PF00884) (PF16347)ER
388413.ALPR1_06170(PF00884) (PF16347)ER
388413.ALPR1_15294(PF13517) (PF07593)ER
388413.ALPR1_15619(PF00884) (PF16347)ER
388413.ALPR1_08558(PF02687) (PF12704)mitochondrial
388413.ALPR1_08578(PF02687) (PF12704)mitochondrial
388413.ALPR1_08573(PF02687) (PF12704)mitochondrial
388413.ALPR1_07765(PF02687) (PF12704)mitochondrial
388413.ALPR1_08623(PF02687) (PF12704)mitochondrial
388413.ALPR1_08628(PF02687) (PF12704)mitochondrial
388413.ALPR1_08563(PF02687) (PF12704)mitochondrial
388413.ALPR1_08498(PF02687) (PF12704)mitochondrial
388413.ALPR1_12780(PF00884) (PF16347)ER
388413.ALPR1_17888(PF00884) (PF16347)ER
388413.ALPR1_08553(PF02687) (PF12704)mitochondrial
388413.ALPR1_09805(PF00884) (PF14707)ER
388413.ALPR1_17893(PF00884) (PF16347)ER
388413.ALPR1_18308(PF02687) (PF12704)mitochondrial
388413.ALPR1_09700(PF13517) (PF07593)ER
388413.ALPR1_02700(PF13517) (PF07593)ER
388413.ALPR1_15304(PF00884) (PF14707)ER
388413.ALPR1_11530(PF04389) (PF04253)(ER); (mitochondrial)
388413.ALPR1_08668(PF02687) (PF12704)mitochondrial
388413.ALPR1_08663(PF02687) (PF12704)mitochondrial
388413.ALPR1_08528(PF02687) (PF12704)mitochondrial
388413.ALPR1_16888(PF00884) (PF16347)ER
388413.ALPR1_19718(PF13517) (PF07593)ER
388413.ALPR1_06280(PF00884) (PF16347)ER
388413.ALPR1_17908(PF00884) (PF16347)ER
388413.ALPR1_08648(PF02687) (PF12704)mitochondrial
388413.ALPR1_08503(PF02687) (PF12704)mitochondrial
388413.ALPR1_08478(PF02687) (PF12704)mitochondrial
388413.ALPR1_08653(PF02687) (PF12704)mitochondrial
388413.ALPR1_08658(PF02687) (PF12704)(mitochondrial)
388413.ALPR1_10130(PF06439)(ER); (mitochondrial)
388413.ALPR1_20148PF15902ER
388413.ALPR1_04573(PF04389)ER
388413.ALPR1_21180PF01541(ER)
388413.ALPR1_14909(PF14534)ER
388413.ALPR1_14639(PF00756)ER
388413.ALPR1_21202(PF04389)ER
388413.ALPR1_09675(PF13517)ER
388413.ALPR1_08938(PF07632)ER
388413.ALPR1_18973(PF06439)ER
388413.ALPR1_11965(PF00884)ER
388413.ALPR1_18578(PF00884)ER
388413.ALPR1_02305(PF12006)ER
388413.ALPR1_02650(PF00050)ER
388413.ALPR1_06335(PF04389)ER
388413.ALPR1_18083PF15902ER
388413.ALPR1_01870(PF00246)ER
388413.ALPR1_01875(PF00884)ER
388413.ALPR1_13854(PF00246)ER
388413.ALPR1_15894(PF06439)ER
388413.ALPR1_07850PF01541(mitochondrial)
388413.ALPR1_16723(PF00756)ER
388413.ALPR1_10430(PF06439)ER
388413.ALPR1_01460(PF00884)ER
388413.ALPR1_13864(PF06439)ER
388413.ALPR1_13869(PF00246)ER
388413.ALPR1_04303(PF00930)ER
388413.ALPR1_04238(PF00756)ER
388413.ALPR1_11580(PF00884)(mitochondrial)
388413.ALPR1_13729(PF03321)(mitochondrial)
388413.ALPR1_08923(PF07632)ER
388413.ALPR1_16134(PF04389)ER
388413.ALPR1_17023(PF00884)ER
388413.ALPR1_06005(PF06439)ER
388413.ALPR1_05975(PF15071)ER
388413.ALPR1_19913(PF00884)ER
388413.ALPR1_19918(PF00884)ER
388413.ALPR1_19138PF15902ER
388413.ALPR1_00695(PF00756)ER
388413.ALPR1_05150(PF00884)ER
388413.ALPR1_15479(PF17170)ER
388413.ALPR1_11330(PF16871)ER
388413.ALPR1_16923(PF14534)ER
388413.ALPR1_13660(PF00930)ER
388413.ALPR1_07835(PF01030)ER
388413.ALPR1_13065(PF12006)ER
388413.ALPR1_13310(PF00756)ER
388413.ALPR1_10965(PF04389)ER
388413.ALPR1_18233(PF04389)ER
388413.ALPR1_01240PF01541mitochondrial; (mitochondrial)
388413.ALPR1_20353(PF00246)ER; (ER)
388413.ALPR1_16808PF15902ER
388413.ALPR1_16119(PF01094)ER
388413.ALPR1_13300(PF00756)ER
388413.ALPR1_13305(PF00756)ER
388413.ALPR1_17978(PF10142)ER
388413.ALPR1_05880(PF13517)ER
388413.ALPR1_20348(PF00246)ER
388413.ALPR1_09750(PF04389)ER
388413.ALPR1_04913(PF06439)ER
388413.ALPR1_04918(PF06439)ER
388413.ALPR1_03485(PF17170)ER
388413.ALPR1_04268(PF00930)ER
388413.ALPR1_00365(PF00756)ER
388413.ALPR1_11005(PF00930)ER
388413.ALPR1_19788(PF17170)ER
388413.ALPR1_12110PF15902ER
388413.ALPR1_12665(PF00884)ER
388413.ALPR1_16344(PF06439)ER
388413.ALPR1_07965(PF10517)ER
388413.ALPR1_07615(PF06439)ER
388413.ALPR1_17413(PF13517)ER
388413.ALPR1_01770(PF04389)ER
388413.ALPR1_05615(PF06283)ER
388413.ALPR1_01975(PF06283)ER
388413.ALPR1_15024(PF14534)ER
388413.ALPR1_11270(PF04367)ER
388413.ALPR1_12650(PF00756)ER
388413.ALPR1_12785(PF00756)ER
388413.ALPR1_16179(PF00884)ER
388413.ALPR1_07570(PF17170)ER
388413.ALPR1_07605(PF09949)ER
388413.ALPR1_08633(PF00884)ER
388413.ALPR1_20703(PF00756)ER
388413.ALPR1_01945(PF04389)ER
388413.ALPR1_03600(PF00884)ER
388413.ALPR1_14524(PF00756)ER
388413.ALPR1_16369PF08409ER
388413.ALPR1_09800PF15902ER
388413.ALPR1_08823(PF00884)ER
388413.ALPR1_07745(PF14534)ER
388413.ALPR1_17948(PF13653)ER
388413.ALPR1_09705(PF00884)(mitochondrial)
388413.ALPR1_18478(PF00756)ER
388413.ALPR1_05855(PF00884)ER
388413.ALPR1_17433(PF00930)ER
388413.ALPR1_09123(PF00246)ER
388413.ALPR1_05705PF15902ER
388413.ALPR1_01155(PF14686)ER
388413.ALPR1_13340(PF00930)ER
388413.ALPR1_07915(PF00930)ER
388413.ALPR1_18483(PF00756)ER
388413.ALPR1_06080(PF04389)ER
388413.ALPR1_06715(PF09949)ER
388413.ALPR1_06885(PF00246)ER
388413.ALPR1_13200PF15902ER
388413.ALPR1_08458(PF13517)ER
388413.ALPR1_01935(PF00884)ER
388413.ALPR1_12430(PF17170)ER
388413.ALPR1_15379(PF02687) (PF12704)(mitochondrial)
388413.ALPR1_16533(PF00884)ER
388413.ALPR1_17043(PF14534)ER
388413.ALPR1_06065(PF06283)ER
388413.ALPR1_02295(PF00884)ER
388413.ALPR1_10800(PF00246)ER
388413.ALPR1_08673(PF06439)ER
388413.ALPR1_02905(PF13517)ER
388413.ALPR1_01900(PF00246)ER
388413.ALPR1_04738(PF06439)ER
388413.ALPR1_15564(PF00884)ER
388413.ALPR1_00985(PF00246)ER
388413.ALPR1_12285(PF06283)(ER); (plastid)
388413.ALPR1_12775(PF00884)ER
388413.ALPR1_12605(PF00884)ER
388413.ALPR1_11980(PF00884)ER
388413.ALPR1_08888(PF00756)ER
388413.ALPR1_10585(PF05495)ER
388413.ALPR1_06855(PF13517)(ER)
388413.ALPR1_20488(PF00884)ER
388413.ALPR1_00665(PF10517)mitochondrial; (mitochondrial)
388413.ALPR1_04035(PF06283)ER
388413.ALPR1_07715(PF00756)ER
388413.ALPR1_08893(PF00756)ER
388413.ALPR1_10860(PF04389)ER
388413.ALPR1_07985PF01541(plastid)
388413.ALPR1_07980PF01541(plastid)
388413.ALPR1_01440(PF00884) (PF14707)
388413.ALPR1_06030(PF00884) (PF16347)
388413.ALPR1_21179PF01541(ER)
388413.ALPR1_21177PF01541(ER)
388413.ALPR1_21178PF01541(ER)
388413.ALPR1_03820(PF06283)(plastid)
388413.ALPR1_01985(PF06283)(mitochondrial)
388413.ALPR1_08813(PF00884)(ER)
388413.ALPR1_17098(PF05684)(ER)
388413.ALPR1_19053PF01541(ER)
388413.ALPR1_03850PF01541(mitochondrial)
388413.ALPR1_15004(PF10013)(mitochondrial); not used
388413.ALPR1_13974(PF02687) (PF12704)
388413.ALPR1_05260(PF02687) (PF12704)
388413.ALPR1_05265PF01541(mitochondrial)
388413.ALPR1_11435(PF02687) (PF12704)
388413.ALPR1_18553(PF14534)(ER)
388413.ALPR1_02255(PF14534)(plastid)
388413.ALPR1_12175(PF03321)
388413.ALPR1_21201PF01541
388413.ALPR1_13025(PF06283)
388413.ALPR1_20553PF01541
388413.ALPR1_14359PF01541
388413.ALPR1_04743(PF04367)
388413.ALPR1_03210(PF03321)
388413.ALPR1_07990PF01541
388413.ALPR1_02275(PF14534)
388413.ALPR1_01650(PF13875)
388413.ALPR1_09340(PF03016)
388413.ALPR1_02475(PF12902)
388413.ALPR1_11335(PF13517)
388413.ALPR1_11020(PF10504)
388413.ALPR1_17373(PF05153)
388413.ALPR1_16169(PF01477)
388413.ALPR1_06365(PF12902)
388413.ALPR1_10215PF01541
388413.ALPR1_19073(PF04765)
388413.ALPR1_14049(PF05684)
388413.ALPR1_08818(PF00884)
388413.ALPR1_02430(PF00246)
388413.ALPR1_08043(PF06439)
388413.ALPR1_12395PF01541
388413.ALPR1_17768(PF07701)
388413.ALPR1_07750PF15902
388413.ALPR1_10220PF01541
388413.ALPR1_10225PF01541
388413.ALPR1_10490(PF13376)
388413.ALPR1_14824(PF13376)
388413.ALPR1_14829(PF13376)
388413.ALPR1_10065PF01541
388413.ALPR1_14364PF01541
388413.ALPR1_14369PF01541
388413.ALPR1_05645(PF13376)
388413.ALPR1_17478(PF04367)
388413.ALPR1_14979(PF13376)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================