Effective results for Rhodobacteraceae bacterium HTCC2150 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 87 proteins (15 high, 72 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
388401.RB2150_12481				(PF13704)	mitochondrial
388401.RB2150_10104				PF04750	ER; (ER)
388401.RB2150_06173				(PF14240)	ER
388401.RB2150_05908				(PF00665)	(mitochondrial)
388401.RB2150_15151				(PF03567)	(mitochondrial)
388401.RB2150_00380				(PF16350)	ER
388401.RB2150_05658				(PF08570)	ER; (ER)
388401.RB2150_02574				(PF11911)	ER
388401.RB2150_11196				(PF14240)	ER
388401.RB2150_09479				(PF11911)	ER
388401.RB2150_12046				(PF08570)	ER
388401.RB2150_12486				(PF02485)	plastid
388401.RB2150_05858				(PF14330)	(mitochondrial)
388401.RB2150_02104				PF13565 (PF00665)
388401.RB2150_02584				PF13565 (PF00665)
388401.RB2150_05918				PF13565 (PF00665)
388401.RB2150_00280				PF13565 (PF00665)
388401.RB2150_11386				PF13565 (PF00665)
388401.RB2150_15880				(PF03567)	(plastid)
388401.RB2150_00245				PF13565 (PF00665)
388401.RB2150_14281				(PF01321)	(mitochondrial)
388401.RB2150_06488				(PF16350)	(ER)
388401.RB2150_00215				PF13565 (PF00665)
388401.RB2150_09474				PF13565 (PF00665)
388401.RB2150_17274				PF13565 (PF00665)
388401.RB2150_00095				PF13565 (PF00665)
388401.RB2150_02804				PF13565 (PF00665)
388401.RB2150_09259				PF13565 (PF00665)
388401.RB2150_17299				PF13565 (PF00665)
388401.RB2150_08638				(PF14248)
388401.RB2150_05118				(PF16350)
388401.RB2150_11121				(PF01755)
388401.RB2150_14886				(PF09458)
388401.RB2150_17777				(PF00665)
388401.RB2150_06003				(PF00665)
388401.RB2150_10711				(PF11927)	not used
388401.RB2150_14011				(PF03567)
388401.RB2150_04443				(PF01321)
388401.RB2150_00170				(PF01847)
388401.RB2150_02289				(PF16350)
388401.RB2150_03384				(PF09994)
388401.RB2150_17579				(PF00665)
388401.RB2150_09779				(PF10013)	not used
388401.RB2150_02129				(PF00665)
388401.RB2150_02549				(PF03567)
388401.RB2150_00015				(PF14248)
388401.RB2150_08018				(PF03567)
388401.RB2150_00155				(PF00665)
388401.RB2150_02554				(PF13704)
388401.RB2150_06633				(PF05706)
388401.RB2150_14356				(PF01321)
388401.RB2150_16042				PF13565
388401.RB2150_08393				(PF08975)
388401.RB2150_00125				(PF00665)
388401.RB2150_01534				(PF13704)
388401.RB2150_07673				(PF16350)
388401.RB2150_00140				(PF00665)
388401.RB2150_17599				(PF00665)
388401.RB2150_01189				(PF13704)
388401.RB2150_07938				(PF03567)
388401.RB2150_14816				(PF09994)
388401.RB2150_16934				(PF01321)
388401.RB2150_18377				(PF00665)
388401.RB2150_09884				(PF00665)
388401.RB2150_14651				(PF13704)
388401.RB2150_16252				(PF01755)
388401.RB2150_18367				(PF09458)
388401.RB2150_13156				(PF01321)
388401.RB2150_13796				(PF01755)
388401.RB2150_17862				(PF01321)
388401.RB2150_04598				(PF09994)
388401.RB2150_14016				(PF02485)
388401.RB2150_11941				(PF09585)
388401.RB2150_11946				(PF09585)
388401.RB2150_08428				(PF00665)
388401.RB2150_17469				(PF12973)
388401.RB2150_09799				(PF12973)
388401.RB2150_03678				(PF01321)
388401.RB2150_03928				(PF01321)
388401.RB2150_05948				(PF00665)
388401.RB2150_04433				(PF11927)
388401.RB2150_06028				(PF00665)
388401.RB2150_00345				(PF03567)
388401.RB2150_06158				(PF12973)
388401.RB2150_11111				(PF01755)
388401.RB2150_09914				(PF12973)
388401.RB2150_07683				(PF16350)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================