Metamenu

Effective results for Bartonella tribocorum CIP 105476 (eggnog40)

Summary

Number of putative secreted proteins: 145
- Predicted by T4SEpre: 105
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 68 proteins (12 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
382640.Btr_0547+(mitochondrial)
382640.Btr_0286+ER
382640.Btr_0625+ER
382640.Btr_2663+ER
382640.Btr_2524+ER
382640.Btr_2526+mitochondrial
382640.Btr_1769+ER
382640.Btr_1952a+ER
382640.Btr_1206(PF06455)ER
382640.Btr_0834(PF03797)ER
382640.Btr_0832(PF03797)ER
382640.Btr_0363+(mitochondrial)
382640.Btr_0461+(mitochondrial)
382640.Btr_1037(PF13332)(ER)
382640.Btr_1850(PF03797)ER
382640.Btr_0678+ER
382640.Btr_2306+mitochondrial
382640.Btr_1788(PF03797)ER
382640.Btr_1785(PF03797)(mitochondrial)
382640.Btr_1787(PF03797)ER
382640.Btr_1786(PF03797)ER
382640.Btr_2338+ER
382640.Btr_1795(PF03797)mitochondrial; (mitochondrial)
382640.Btr_1793(PF03797)ER
382640.Btr_0273+ER; (ER)
382640.Btr_0455(PF04851) (PF02384)(plastid)
382640.Btr_0057+(mitochondrial)
382640.Btr_2435+(ER)
382640.Btr_0693+mitochondrial
382640.Btr_1655(PF03797)ER
382640.Btr_0190+ER
382640.Btr_1488+(mitochondrial)
382640.Btr_1640+(mitochondrial)
382640.Btr_2358+ER
382640.Btr_2590+ER
382640.Btr_0841+ER
382640.Btr_1462(PF13332)(mitochondrial); (plastid)
382640.Btr_2348+ER
382640.Btr_2346+ER; (ER)
382640.Btr_2347+ER; (ER)
382640.Btr_2583+ER
382640.Btr_0853+ER
382640.Btr_1450(PF03797)(mitochondrial)
382640.Btr_1662(PF03797)ER
382640.Btr_1663(PF03797)ER
382640.Btr_1660(PF03797)(mitochondrial)
382640.Btr_1661(PF03797)(mitochondrial)
382640.Btr_0410(PF13332)ER
382640.Btr_1957+(mitochondrial)
382640.Btr_1597+(mitochondrial)
382640.Btr_0541(PF04851) (PF02384)
382640.Btr_0546+(PF00436)
382640.Btr_0164(PF04851) (PF02384)
382640.Btr_1707+(ER)
382640.Btr_1080(PF04851) (PF02384)
382640.Btr_1888+(mitochondrial)
382640.Btr_0362(PF00436)(mitochondrial)
382640.Btr_1469+(mitochondrial)
382640.Btr_1035(PF04851) (PF02384)
382640.Btr_1021(PF04851) (PF02384)
382640.Btr_0444+(PF00436)
382640.Btr_0306(PF00959)(mitochondrial)
382640.Btr_1006(PF04851) (PF02384)
382640.Btr_1105(PF04851) (PF02384)
382640.Btr_1064(PF04851) (PF02384)
382640.Btr_1053(PF04851) (PF02384)
382640.Btr_2491(PF04851) (PF02384)
382640.Btr_1438+(PF00436)
382640.Btr_1705+
382640.Btr_1704+
382640.Btr_1709+
382640.Btr_1082PF13148
382640.Btr_0288+
382640.Btr_0376PF09588
382640.Btr_0371+
382640.Btr_0370+
382640.Btr_0114+
382640.Btr_0624+
382640.Btr_1710+
382640.Btr_2289(PF00436)
382640.Btr_2444+
382640.Btr_2442+
382640.Btr_2449(PF01783)
382640.Btr_2448(PF01783)
382640.Btr_2265(PF00959)
382640.Btr_0961(PF00436)
382640.Btr_0563PF09588
382640.Btr_0741(PF04851)
382640.Btr_2294+
382640.Btr_2298+
382640.Btr_2450(PF01783)not used
382640.Btr_2279+
382640.Btr_0964+
382640.Btr_1179(PF04851)
382640.Btr_2113PF09588
382640.Btr_0658+
382640.Btr_0909+
382640.Btr_0833(PF03797)
382640.Btr_2092+
382640.Btr_0336+
382640.Btr_0482(PF00959)
382640.Btr_0241+
382640.Btr_2229(PF00959)
382640.Btr_2315+
382640.Btr_0808+
382640.Btr_1039+
382640.Btr_0496(PF04218)
382640.Btr_2304PF09588
382640.Btr_1331+
382640.Btr_1023PF13148
382640.Btr_0315(PF00959)
382640.Btr_0440+
382640.Btr_2686+
382640.Btr_1581+
382640.Btr_1304+
382640.Btr_1875+
382640.Btr_0457PF13148
382640.Btr_1908+
382640.Btr_1473+
382640.Btr_1001(PF00436)
382640.Btr_0426+
382640.Btr_0425PF09588
382640.Btr_0514+
382640.Btr_0512+
382640.Btr_1646+
382640.Btr_0995+
382640.Btr_0972+
382640.Btr_0509+
382640.Btr_0857(PF05154)
382640.Btr_0858(PF05154)
382640.Btr_0859(PF05154)
382640.Btr_1585+
382640.Btr_0980PF09588
382640.Btr_0984PF09588
382640.Btr_1066PF13148
382640.Btr_1119(PF00959)
382640.Btr_1930(PF04851)
382640.Btr_0407(PF04851)
382640.Btr_2482+
382640.Btr_1051PF13148
382640.Btr_0529+
382640.Btr_1955+
382640.Btr_0555+
382640.Btr_1739(PF04851)
382640.Btr_0956+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.4 (24/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================