Effective results for Roseobacter denitrificans OCh 114 (eggnog40)
Summary
Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 66 proteins (2 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
375451.RD1_1345 | (PF01571) (PF16350) (PF08669) | (ER) | |||
375451.RD1_3093 | (PF01571) (PF16350) (PF08669) | ER | |||
375451.RD1_4112 | (PF01571) (PF16350) (PF08669) | (ER) | |||
375451.RD1_1790 | (PF01571) (PF08669) | (mitochondrial) | |||
375451.RD1_3434 | (PF01571) (PF16350) (PF08669) | (ER) | |||
375451.RD1_1568 | (PF02239) | ER | |||
375451.RD1_1240 | (PF05990) | ER | |||
375451.RD1_4236 | (PF02882) | (mitochondrial); (plastid) | |||
375451.RD1_2288 | (PF01571) (PF08669) | (mitochondrial) | |||
375451.RD1_1497 | (PF16952) | (ER); (plastid) | |||
375451.RD1_0017 | (PF01571) (PF16350) (PF08669) | ||||
375451.RD1_0019 | (PF01571) (PF16350) (PF08669) | ||||
375451.RD1_0276 | (PF13683) | (mitochondrial) | |||
375451.RD1_2638 | (PF00625) | (mitochondrial) | |||
375451.RD1_0607 | (PF01571) (PF16350) (PF08669) | ||||
375451.RD1_0145 | (PF03209) | ER | |||
375451.RD1_0895 | (PF02239) | ER | |||
375451.RD1_3545 | (PF03209) | mitochondrial | |||
375451.RD1_3768 | (PF05990) | (mitochondrial) | |||
375451.RD1_1573 | (PF02239) | ER | |||
375451.RD1_3858 | (PF01571) (PF08669) | ||||
375451.RD1_1747 | (PF01571) (PF08669) | ||||
375451.RD1_2105 | (PF02882) | (mitochondrial) | |||
375451.RD1_1938 | (PF05990) | (plastid) | |||
375451.RD1_0010 | (PF01571) (PF08669) | ||||
375451.RD1_0003 | (PF01571) (PF08669) | ||||
375451.RD1_1222 | (PF01571) (PF08669) | ||||
375451.RD1_1528 | (PF00625) | plastid | |||
375451.RD1_1704 | (PF01571) (PF08669) | ||||
375451.RD1_2388 | (PF00625) | (plastid) | |||
375451.RD1_1756 | (PF05153) | ||||
375451.RD1_3449 | (PF13683) | ||||
375451.RD1_3063 | (PF13683) | ||||
375451.RD1_1565 | (PF02239) | ||||
375451.RD1_0763 | (PF05990) | ||||
375451.RD1_1556 | (PF13875) | ||||
375451.RD1_3877 | (PF08547) | ||||
375451.RD1_0753 | (PF03070) | ||||
375451.RD1_0755 | (PF03070) | ||||
375451.RD1_1152 | (PF03070) | ||||
375451.RD1_4237 | (PF02882) | ||||
375451.RD1_3258 | (PF09585) | ||||
375451.RD1_3259 | (PF09585) | ||||
375451.RD1_2246 | (PF13683) | ||||
375451.RD1_0472 | (PF09731) | ||||
375451.RD1_0006 | (PF11927) | ||||
375451.RD1_0264 | (PF13683) | ||||
375451.RD1_2567 | (PF11927) | ||||
375451.RD1_2568 | (PF11927) | ||||
375451.RD1_1852 | (PF13683) | ||||
375451.RD1_1984 | PF11781 | ||||
375451.RD1_4107 | (PF08547) | ||||
375451.RD1_3373 | (PF08975) | ||||
375451.RD1_3717 | PF03188 | ||||
375451.RD1_1144 | (PF13683) | ||||
375451.RD1_3380 | (PF13683) | ||||
375451.RD1_0134 | (PF03209) | ||||
375451.RD1_3047 | (PF01786) | ||||
375451.RD1_1162 | (PF00549) | ||||
375451.RD1_1163 | (PF00549) | ||||
375451.RD1_1615 | (PF00549) | ||||
375451.RD1_1611 | (PF00549) | ||||
375451.RD1_3613 | (PF03070) | ||||
375451.RD1_4245 | (PF00549) | ||||
375451.RD1_4246 | (PF00549) | ||||
375451.RD1_0158 | (PF13683) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)