Effective results for Roseobacter denitrificans OCh 114 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 66 proteins (2 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
375451.RD1_1345(PF01571) (PF16350) (PF08669)(ER)
375451.RD1_3093(PF01571) (PF16350) (PF08669)ER
375451.RD1_4112(PF01571) (PF16350) (PF08669)(ER)
375451.RD1_1790(PF01571) (PF08669)(mitochondrial)
375451.RD1_3434(PF01571) (PF16350) (PF08669)(ER)
375451.RD1_1568(PF02239)ER
375451.RD1_1240(PF05990)ER
375451.RD1_4236(PF02882)(mitochondrial); (plastid)
375451.RD1_2288(PF01571) (PF08669)(mitochondrial)
375451.RD1_1497(PF16952)(ER); (plastid)
375451.RD1_0017(PF01571) (PF16350) (PF08669)
375451.RD1_0019(PF01571) (PF16350) (PF08669)
375451.RD1_0276(PF13683)(mitochondrial)
375451.RD1_2638(PF00625)(mitochondrial)
375451.RD1_0607(PF01571) (PF16350) (PF08669)
375451.RD1_0145(PF03209)ER
375451.RD1_0895(PF02239)ER
375451.RD1_3545(PF03209)mitochondrial
375451.RD1_3768(PF05990)(mitochondrial)
375451.RD1_1573(PF02239)ER
375451.RD1_3858(PF01571) (PF08669)
375451.RD1_1747(PF01571) (PF08669)
375451.RD1_2105(PF02882)(mitochondrial)
375451.RD1_1938(PF05990)(plastid)
375451.RD1_0010(PF01571) (PF08669)
375451.RD1_0003(PF01571) (PF08669)
375451.RD1_1222(PF01571) (PF08669)
375451.RD1_1528(PF00625)plastid
375451.RD1_1704(PF01571) (PF08669)
375451.RD1_2388(PF00625)(plastid)
375451.RD1_1756(PF05153)
375451.RD1_3449(PF13683)
375451.RD1_3063(PF13683)
375451.RD1_1565(PF02239)
375451.RD1_0763(PF05990)
375451.RD1_1556(PF13875)
375451.RD1_3877(PF08547)
375451.RD1_0753(PF03070)
375451.RD1_0755(PF03070)
375451.RD1_1152(PF03070)
375451.RD1_4237(PF02882)
375451.RD1_3258(PF09585)
375451.RD1_3259(PF09585)
375451.RD1_2246(PF13683)
375451.RD1_0472(PF09731)
375451.RD1_0006(PF11927)
375451.RD1_0264(PF13683)
375451.RD1_2567(PF11927)
375451.RD1_2568(PF11927)
375451.RD1_1852(PF13683)
375451.RD1_1984PF11781
375451.RD1_4107(PF08547)
375451.RD1_3373(PF08975)
375451.RD1_3717PF03188
375451.RD1_1144(PF13683)
375451.RD1_3380(PF13683)
375451.RD1_0134(PF03209)
375451.RD1_3047(PF01786)
375451.RD1_1162(PF00549)
375451.RD1_1163(PF00549)
375451.RD1_1615(PF00549)
375451.RD1_1611(PF00549)
375451.RD1_3613(PF03070)
375451.RD1_4245(PF00549)
375451.RD1_4246(PF00549)
375451.RD1_0158(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================