Effective results for Rhodobacter sphaeroides ATCC 17025 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 42 proteins (0 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
349102.Rsph17025_0773(PF00148)(mitochondrial)
349102.Rsph17025_0772(PF00148)(ER); (plastid)
349102.Rsph17025_1880(PF07298)ER
349102.Rsph17025_0033(PF00777)mitochondrial
349102.Rsph17025_0014(PF14295)ER
349102.Rsph17025_0804(PF02371)mitochondrial; (mitochondrial)
349102.Rsph17025_1828(PF02371)(mitochondrial); mitochondrial
349102.Rsph17025_1250(PF00148)(mitochondrial)
349102.Rsph17025_1017(PF03209)ER
349102.Rsph17025_1005(PF03209)mitochondrial; (ER)
349102.Rsph17025_0083(PF07298)ER
349102.Rsph17025_1727(PF14216)mitochondrial
349102.Rsph17025_2034(PF00148)
349102.Rsph17025_2035(PF00148)
349102.Rsph17025_1429(PF02371)
349102.Rsph17025_0942(PF01695)
349102.Rsph17025_0976(PF07298)
349102.Rsph17025_0979(PF03209)
349102.Rsph17025_1831(PF01695)
349102.Rsph17025_1833(PF01695)
349102.Rsph17025_0803(PF02371)
349102.Rsph17025_0802(PF02371)
349102.Rsph17025_0801(PF01695)
349102.Rsph17025_0800(PF01695)
349102.Rsph17025_2135(PF01695)
349102.Rsph17025_2134(PF01695)
349102.Rsph17025_2132(PF01695)
349102.Rsph17025_1810(PF01695)
349102.Rsph17025_0474(PF02371)
349102.Rsph17025_1248(PF00148)
349102.Rsph17025_1249(PF00148)
349102.Rsph17025_0314(PF01695)
349102.Rsph17025_1247(PF00148)
349102.Rsph17025_0860(PF02371)
349102.Rsph17025_1800(PF02371)
349102.Rsph17025_2112(PF05063)
349102.Rsph17025_1010(PF00148)
349102.Rsph17025_1009(PF00148)
349102.Rsph17025_0735(PF02371)
349102.Rsph17025_0729(PF02371)
349102.Rsph17025_1288(PF05063)
349102.Rsph17025_1437(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================