Effective results for Chlorobium chlorochromatii CaD3 (eggnog40)

Summary

Number of putative secreted proteins: 75
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 75 proteins (15 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
340177.Cag_1235				PF13205 PF14252	(ER)
340177.Cag_0519				(PF13271)	(ER)
340177.Cag_1242				PF14252	(ER)
340177.Cag_1809				PF13205	ER
340177.Cag_0529				PF13205	mitochondrial
340177.Cag_0822				PF10046	mitochondrial; (mitochondrial)
340177.Cag_1560				PF13205 PF14252	(mitochondrial)
340177.Cag_1997				(PF07720)	ER
340177.Cag_1671				(PF08011) (PF09820)
340177.Cag_0508				(PF08477) (PF16095)
340177.Cag_0507				(PF08477) (PF16095)
340177.Cag_0724				(PF08011) (PF09820)
340177.Cag_1241				(PF08011) (PF09820)
340177.Cag_0535				(PF08011) (PF09820)
340177.Cag_1722				PF13205	(ER)
340177.Cag_1721				(PF08011) (PF09820)
340177.Cag_1046				(PF08011) (PF09820)
340177.Cag_0738				PF13205 PF14252
340177.Cag_1897				(PF06119) PF13205
340177.Cag_1080				(PF08011) (PF09820)
340177.Cag_0755				(PF08011) (PF09820)
340177.Cag_0034				(PF12159) (PF10693)
340177.Cag_0227				(PF11965)	(mitochondrial)
340177.Cag_1024				(PF08011) (PF09820)
340177.Cag_1025				(PF08011) (PF09820)
340177.Cag_1026				PF13205 (PF00059)
340177.Cag_1021				(PF08011) (PF09820)
340177.Cag_1101				(PF04326)
340177.Cag_0721				(PF06250)
340177.Cag_1063				(PF01610)
340177.Cag_1580				(PF01610)
340177.Cag_0452				(PF02661)
340177.Cag_0182				(PF02661)
340177.Cag_0980				(PF02661)
340177.Cag_0983				(PF11965)
340177.Cag_1262				(PF04383)
340177.Cag_1918				(PF01610)
340177.Cag_1469				(PF02661)
340177.Cag_1864				(PF06250)
340177.Cag_1597				PF13205
340177.Cag_1047				PF14252
340177.Cag_2003				(PF02661)
340177.Cag_1920				PF14252
340177.Cag_1708				(PF13271)
340177.Cag_1443				(PF04383)
340177.Cag_1441				(PF02661)
340177.Cag_0403				(PF06250)
340177.Cag_0578				(PF06250)
340177.Cag_0379				(PF06250)
340177.Cag_1381				(PF14701)
340177.Cag_1097				(PF02661)
340177.Cag_0708				(PF01610)
340177.Cag_0657				(PF04326)
340177.Cag_1884				(PF13271)
340177.Cag_1885				(PF04326)
340177.Cag_0597				(PF01610)
340177.Cag_1562				(PF06250)
340177.Cag_1981				(PF01610)
340177.Cag_0765				(PF01610)
340177.Cag_0166				(PF04326)
340177.Cag_0831				(PF02661)
340177.Cag_0832				(PF01610)
340177.Cag_0086				(PF01610)
340177.Cag_1507				(PF01610)
340177.Cag_0748				(PF01610)
340177.Cag_1022				PF13205
340177.Cag_0796				(PF16114)
340177.Cag_1239				PF14252
340177.Cag_0120				(PF09366)
340177.Cag_0658				(PF01610)
340177.Cag_0011				(PF09366)
340177.Cag_0788				(PF01610)
340177.Cag_0874				(PF06250)
340177.Cag_1221				(PF04326)
340177.Cag_0202				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================