Effective results for Chlorobium phaeobacteroides BS1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
331678.Cphamn1_0253				(PF02374)	mitochondrial
331678.Cphamn1_2193				(PF02374)	mitochondrial
331678.Cphamn1_2198				(PF02374)	(mitochondrial); mitochondrial
331678.Cphamn1_0091				(PF02374)	(mitochondrial)
331678.Cphamn1_1125				(PF02374)	(mitochondrial)
331678.Cphamn1_1278				PF10046	ER; (ER)
331678.Cphamn1_1048				(PF11965)	(mitochondrial)
331678.Cphamn1_0055				(PF12200)	(mitochondrial)
331678.Cphamn1_0712				(PF05598)	(ER)
331678.Cphamn1_0022				(PF12159) (PF10693)
331678.Cphamn1_0829				(PF05598)	(ER)
331678.Cphamn1_0797				(PF02374)
331678.Cphamn1_0494				(PF05598)
331678.Cphamn1_0070				(PF12200)
331678.Cphamn1_1675				(PF16565)
331678.Cphamn1_2324				(PF05598)
331678.Cphamn1_2520				(PF02873)
331678.Cphamn1_0663				(PF08014)
331678.Cphamn1_0664				(PF05598)
331678.Cphamn1_0665				(PF08014)
331678.Cphamn1_0273				(PF09366)
331678.Cphamn1_0722				(PF05598)
331678.Cphamn1_2434				(PF05598)
331678.Cphamn1_2422				(PF02873)
331678.Cphamn1_1432				(PF05598)
331678.Cphamn1_0095				(PF09366)
331678.Cphamn1_1382				(PF05598)
331678.Cphamn1_1380				PF13281
331678.Cphamn1_1361				(PF05598)
331678.Cphamn1_1350				(PF16114)
331678.Cphamn1_0754				PF09412
331678.Cphamn1_1921				(PF05598)
331678.Cphamn1_2452				(PF09445)
331678.Cphamn1_2450				(PF05598)
331678.Cphamn1_2207				(PF11965)
331678.Cphamn1_2205				(PF11965)
331678.Cphamn1_1269				(PF12588)
331678.Cphamn1_2477				PF13281

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================