Metamenu

Effective results for Brevibacterium linens BL2 (eggnog40)

Summary

Number of putative secreted proteins: 132
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 132 proteins (27 high, 105 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
321955.BlinB_010200007900(PF02028)(mitochondrial)
321955.BlinB_010200004934(PF00665)(mitochondrial); (plastid)
321955.BlinB_010200013076(PF00665)mitochondrial
321955.BlinB_010200009872(PF00665)mitochondrial
321955.BlinB_010200020097(PF00665)ER; (ER)
321955.BlinB_010200012517(PF03417)mitochondrial; (mitochondrial)
321955.BlinB_010200011421(PF00665)mitochondrial
321955.BlinB_010200018166(PF02028)ER
321955.BlinB_010200016827PF01610(mitochondrial)
321955.BlinB_010200016297(PF11070)ER
321955.BlinB_010200003582(PF00665)(mitochondrial)
321955.BlinB_010200020032(PF00665)(mitochondrial)
321955.BlinB_010200016737(PF03485)(plastid)
321955.BlinB_010200019495(PF03485)(plastid)
321955.BlinB_010200001997(PF00665)(mitochondrial)
321955.BlinB_010200019802(PF01695)(ER)
321955.BlinB_010200012755(PF03485)(plastid)
321955.BlinB_010200019055(PF01695)(ER)
321955.BlinB_010200020242(PF00665)(mitochondrial)
321955.BlinB_010200003232(PF02028)
321955.BlinB_010200014850(PF01695)
321955.BlinB_010200002507(PF02028)
321955.BlinB_010200009517(PF00872)not used
321955.BlinB_010200013341PF01610
321955.BlinB_010200014198(PF00872)
321955.BlinB_010200014193(PF13565)
321955.BlinB_010200019270(PF01695)
321955.BlinB_010200014770(PF01527)
321955.BlinB_010200005984(PF00665)
321955.BlinB_010200007344PF08213not used
321955.BlinB_010200007765(PF13565)
321955.BlinB_010200013081(PF01695)
321955.BlinB_010200015837(PF01695)
321955.BlinB_010200013396(PF07884)
321955.BlinB_010200005514(PF01527)
321955.BlinB_010200005199PF00910
321955.BlinB_010200016844PF01610
321955.BlinB_010200019737(PF01695)
321955.BlinB_010200019732(PF00665)
321955.BlinB_010200018705(PF00665)
321955.BlinB_010200019380(PF00665)
321955.BlinB_010200005859(PF03417)
321955.BlinB_010200019722(PF00872)
321955.BlinB_010200001527(PF03417)
321955.BlinB_010200020212(PF01527)
321955.BlinB_010200013601(PF00872)
321955.BlinB_010200018390(PF00872)not used
321955.BlinB_010200010267PF03719
321955.BlinB_010200014720PF01610not used
321955.BlinB_010200014725(PF07884)
321955.BlinB_010200011029PF01610
321955.BlinB_010200020347(PF01527)
321955.BlinB_010200010137(PF02028)
321955.BlinB_010200010642(PF00665)
321955.BlinB_010200007154(PF00872)
321955.BlinB_010200020402PF01610
321955.BlinB_010200013616(PF01695)
321955.BlinB_010200009877(PF01527)
321955.BlinB_010200016417(PF02028)
321955.BlinB_010200005019(PF09683)
321955.BlinB_010200003267PF01610
321955.BlinB_010200004304(PF00665)not used
321955.BlinB_010200002227(PF13565)
321955.BlinB_010200020417PF01610not used
321955.BlinB_010200010242PF01610
321955.BlinB_010200013623(PF00872)not used
321955.BlinB_010200005004(PF00872)
321955.BlinB_010200008513(PF13468)
321955.BlinB_010200020427(PF00665)
321955.BlinB_010200009460(PF13468)
321955.BlinB_010200014048(PF00665)
321955.BlinB_010200005364(PF00872)
321955.BlinB_010200020317(PF01695)not used
321955.BlinB_010200008508(PF13468)
321955.BlinB_010200014855(PF00665)
321955.BlinB_010200019977PF01610
321955.BlinB_010200011416(PF01695)
321955.BlinB_010200020432(PF01527)
321955.BlinB_010200019370(PF00872)
321955.BlinB_010200010222(PF02028)
321955.BlinB_010200009110(PF01527)
321955.BlinB_010200009115(PF01527)
321955.BlinB_010200020447(PF00872)
321955.BlinB_010200017134(PF13565)
321955.BlinB_010200009120(PF00665)
321955.BlinB_010200019145(PF01695)
321955.BlinB_010200014870(PF00872)
321955.BlinB_010200011546(PF00665)
321955.BlinB_010200001632PF01610
321955.BlinB_010200019365(PF00872)
321955.BlinB_010200017274(PF01695)not used
321955.BlinB_010200019130(PF01527)
321955.BlinB_010200018545(PF00872)not used
321955.BlinB_010200020102(PF01527)
321955.BlinB_010200007449(PF00665)
321955.BlinB_010200020077PF01610
321955.BlinB_010200020462(PF01527)
321955.BlinB_010200020467(PF00665)
321955.BlinB_010200006823PF01610
321955.BlinB_010200004929(PF01695)
321955.BlinB_010200017469PF03719not used
321955.BlinB_010200001712(PF13565)
321955.BlinB_010200020482(PF01527)
321955.BlinB_010200015227PF01610not used
321955.BlinB_010200014795PF01610
321955.BlinB_010200015687(PF13565)
321955.BlinB_010200015682(PF00872)
321955.BlinB_010200018550(PF00872)
321955.BlinB_010200020262(PF01527)
321955.BlinB_010200009892PF01610
321955.BlinB_010200018835PF01610
321955.BlinB_010200003577(PF01527)
321955.BlinB_010200010632PF01610
321955.BlinB_010200010637(PF01527)
321955.BlinB_010200011456(PF01695)not used
321955.BlinB_010200011451PF01610
321955.BlinB_010200019682(PF01695)not used
321955.BlinB_010200018216PF01610not used
321955.BlinB_010200014418(PF02028)
321955.BlinB_010200018520PF01610
321955.BlinB_010200020272(PF00872)
321955.BlinB_010200002772(PF00872)
321955.BlinB_010200019450(PF07884)
321955.BlinB_010200004299PF01610not used
321955.BlinB_010200019667(PF01527)
321955.BlinB_010200007109(PF00665)
321955.BlinB_010200007104(PF01527)
321955.BlinB_010200012111(PF00872)not used
321955.BlinB_010200009922(PF05495)
321955.BlinB_010200014765(PF00665)
321955.BlinB_010200011801PF01610
321955.BlinB_010200020382(PF00665)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================