Metamenu

Effective results for Roseobacter sp. MED193 (eggnog40)

Summary

Number of putative secreted proteins: 102
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 102 proteins (3 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314262.MED193_15617PF00337 PF01762 (PF13704)(plastid)
314262.MED193_14167(PF13704)mitochondrial
314262.MED193_14162(PF13704)mitochondrial
314262.MED193_03050(PF03092)(ER)
314262.MED193_16047(PF03547)ER
314262.MED193_19774(PF00036)ER
314262.MED193_05564(PF04143)(ER)
314262.MED193_16944(PF13704)(mitochondrial)
314262.MED193_14412(PF03547)ER
314262.MED193_18579(PF03547)ER
314262.MED193_05994(PF03567)mitochondrial
314262.MED193_00020(PF03547)ER
314262.MED193_11569(PF03547)ER
314262.MED193_02570(PF03547)(ER)
314262.MED193_14717(PF03547)ER
314262.MED193_06694(PF04143)ER
314262.MED193_06699(PF04143)ER
314262.MED193_14172(PF02485)(ER)
314262.MED193_16232(PF10013)(mitochondrial); not used
314262.MED193_00280(PF13872) (PF13871)
314262.MED193_05779(PF04143)(ER)
314262.MED193_00945(PF01527) (PF00665)
314262.MED193_02065(PF13872) (PF13871)
314262.MED193_02925(PF00665)
314262.MED193_00775(PF00665)
314262.MED193_21886(PF00665)
314262.MED193_20119(PF09458)
314262.MED193_02005(PF03432)
314262.MED193_08683(PF16013)
314262.MED193_08688(PF00665)
314262.MED193_15972(PF00665)
314262.MED193_15977(PF01527)
314262.MED193_06379(PF01527)
314262.MED193_06374(PF00665)
314262.MED193_06719(PF13704)
314262.MED193_02905(PF01527)
314262.MED193_02900(PF01527)
314262.MED193_22196(PF07045)
314262.MED193_08693(PF01527)
314262.MED193_14177(PF03567)
314262.MED193_15777(PF02485)
314262.MED193_14912(PF03432)
314262.MED193_18404(PF00665)
314262.MED193_06739(PF02475)
314262.MED193_15782(PF03567)
314262.MED193_15422(PF00665)
314262.MED193_12658(PF16565)
314262.MED193_05381(PF01527)
314262.MED193_05386(PF00665)
314262.MED193_05899(PF07045)
314262.MED193_00465(PF03432)
314262.MED193_21376(PF00665)
314262.MED193_06729(PF13704)
314262.MED193_18424(PF00665)
314262.MED193_21381(PF01527)
314262.MED193_21386(PF01527)
314262.MED193_06929(PF13704)
314262.MED193_20639(PF00665)
314262.MED193_15457(PF01527)
314262.MED193_15462(PF00665)
314262.MED193_04356(PF07045)
314262.MED193_00700(PF01527)
314262.MED193_05999(PF16804)
314262.MED193_04007(PF00665)
314262.MED193_00900(PF01527)
314262.MED193_00905(PF00665)
314262.MED193_07209(PF04143)
314262.MED193_15587(PF03567)
314262.MED193_09250(PF04143)
314262.MED193_18819PF12873
314262.MED193_16979(PF03432)
314262.MED193_00330(PF00665)
314262.MED193_14992(PF07045)
314262.MED193_13732(PF09585)
314262.MED193_01990(PF00665)
314262.MED193_02895(PF00665)
314262.MED193_18129(PF01527)
314262.MED193_13727(PF09585)
314262.MED193_19054(PF01527)
314262.MED193_20649(PF01527)
314262.MED193_03772(PF01527)
314262.MED193_18134(PF00665)
314262.MED193_17094(PF00665)
314262.MED193_17099(PF01527)
314262.MED193_00015(PF07976)
314262.MED193_20654(PF01527)
314262.MED193_06339(PF03432)
314262.MED193_01220(PF07976)
314262.MED193_13563(PF00665)
314262.MED193_09445(PF13704)
314262.MED193_06744(PF13704)
314262.MED193_20134(PF00665)
314262.MED193_15512(PF00665)
314262.MED193_02930(PF01527)
314262.MED193_02445(PF00665)
314262.MED193_18444(PF01527)
314262.MED193_01760(PF00665)
314262.MED193_01765(PF01527)
314262.MED193_11732(PF07045)
314262.MED193_20129(PF01527)
314262.MED193_15507(PF01527)
314262.MED193_15342PF03175

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================