Effective results for Vibrio fischeri ES114 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
312309.VF_1322(PF01773) (PF07662)ER
312309.VF_A0209(PF06742) (PF06863)(ER)
312309.VF_A1059(PF06742) (PF06863)ER
312309.VF_A0967(PF01773) (PF07662)ER
312309.VF_2065(PF01773) (PF07662)ER
312309.VF_1096(PF01773) (PF07662)ER
312309.VF_1071(PF06742) (PF06863)ER
312309.VF_1070(PF06742) (PF06863)ER
312309.VF_A0491(PF06742) (PF06863)ER
312309.VF_0502(PF01773) (PF07662)ER
312309.VF_A0490(PF06742) (PF06863)ER
312309.VF_A0123(PF00854)ER; (ER)
312309.VF_0802(PF00854)ER
312309.VF_A0899(PF14707)(ER)
312309.VF_0575(PF01679)ER
312309.VF_1427(PF14707)ER
312309.VF_A0090(PF00030)ER
312309.VF_1256(PF02112)ER
312309.VF_1280(PF08180)ER
312309.VF_A0621(PF00030)ER
312309.VF_0984(PF00031)ER
312309.VF_1430(PF14707)(ER)
312309.VF_A1060(PF06742) (PF06863)
312309.VF_2629(PF01679)ER; not used
312309.VF_0976(PF03199) (PF03917)
312309.VF_1472(PF10013)plastid
312309.VF_2359(PF05706)
312309.VF_A0124(PF00854)
312309.VF_A0532PF04927not used
312309.VF_0578(PF01786)
312309.VF_1428(PF14707)
312309.VF_2066(PF10063)
312309.VF_1850(PF09811)
312309.VF_A0021(PF00854)
312309.VF_1124(PF00854)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================