Effective results for Thermomicrobium roseum DSM 5159 (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 12 proteins (2 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
309801.trd_0254(PF12483)ER
309801.trd_0350PF03464 PF03465
309801.trd_0340(PF09818)(mitochondrial)
309801.trd_1542(PF00643)
309801.trd_0144(PF01597)
309801.trd_1774PF10343
309801.trd_0157(PF01597)
309801.trd_0342(PF09818)
309801.trd_0752(PF01597)
309801.trd_0864(PF00025)
309801.trd_0143(PF01597)
309801.trd_1266(PF04423)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================