Effective results for Arthrobacter sp. FB24 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 45 proteins (1 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
290399.Arth_0404				(PF00251) (PF08244)	ER
290399.Arth_3796				(PF00251) (PF08244)	ER
290399.Arth_1976				(PF03073)	mitochondrial; (mitochondrial)
290399.Arth_0309				(PF11070)	(mitochondrial); mitochondrial
290399.Arth_0536				(PF09348)	(mitochondrial)
290399.Arth_0403				(PF00251) (PF08244)
290399.Arth_0425				(PF00251) (PF08244)
290399.Arth_0054				(PF00251) (PF08244)
290399.Arth_0073				(PF02656)
290399.Arth_0074				(PF02656)
290399.Arth_4012				(PF01262)
290399.Arth_1992				(PF00406)
290399.Arth_1995				(PF01326)
290399.Arth_3615				(PF03073)
290399.Arth_0560				(PF01262)
290399.Arth_0474				(PF01326)
290399.Arth_1814				(PF01262)
290399.Arth_0259				(PF06202)
290399.Arth_0384				(PF01326)
290399.Arth_1719				(PF02656)
290399.Arth_1718				(PF02656)
290399.Arth_1939				(PF06202)
290399.Arth_1489				(PF01409)
290399.Arth_0631				(PF00406)
290399.Arth_2339				(PF08713)
290399.Arth_3880				(PF01262)
290399.Arth_3451				(PF08713)
290399.Arth_1744				(PF01262)
290399.Arth_2857				(PF01326)
290399.Arth_4086				(PF01262)
290399.Arth_1696				(PF02656)
290399.Arth_1962				(PF06202)
290399.Arth_3312				(PF09224)
290399.Arth_2311				(PF00102)
290399.Arth_0769				(PF03073)
290399.Arth_2955				(PF00406)
290399.Arth_1972				(PF01326)
290399.Arth_3140				(PF00251)
290399.Arth_3761				(PF06202)
290399.Arth_3360				(PF01409)
290399.Arth_0339				(PF01326)
290399.Arth_0067				(PF08713)
290399.Arth_0451				(PF09348)
290399.Arth_3300				PF08213	not used
290399.Arth_2433				(PF08713)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================