Effective results for Arthrobacter aurescens TC1 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 30 proteins (0 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
290340.AAur_0948(PF00251) (PF08244)(ER)
290340.AAur_2831(PF08570)ER
290340.AAur_0107(PF08570)ER
290340.AAur_0311(PF03147) (PF01409)
290340.AAur_1401(PF00251) (PF08244)
290340.AAur_0693(PF00251) (PF08244)
290340.AAur_0579(PF02728) (PF01179)
290340.AAur_1378(PF02728) (PF01179)
290340.AAur_1959(PF00251) (PF08244)
290340.AAur_1958(PF00251) (PF08244)
290340.AAur_1462(PF13683)
290340.AAur_2325(PF08713)
290340.AAur_1899(PF13816)
290340.AAur_3077(PF08713)
290340.AAur_3299(PF13683)
290340.AAur_1740(PF13683)
290340.AAur_0017(PF00643)
290340.AAur_3119(PF00251)
290340.AAur_3113(PF13683)
290340.AAur_3110(PF13683)
290340.AAur_2403(PF08713)
290340.AAur_1624(PF03147)
290340.AAur_1623(PF01409)
290340.AAur_0483(PF04961)
290340.AAur_1383(PF13683)
290340.AAur_0947(PF00251)
290340.AAur_3152(PF13683)
290340.AAur_0982(PF04961)
290340.AAur_0457(PF08713)
290340.AAur_3173(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================